BAC Information

Click to search

BAC

Clone NameMSMg01-084E14
Chromosome19 (Build37)
Map Location 23,292,907 - 23,293,519
singlet/doubletsinglet
Overlap geneSmc5
Upstream geneTrpm3, EG433230, Klf9
Downstream geneMamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1, Gm967, 1700021P04Rik, Tjp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084E14.T7 (MSMg01no084_e14.b1)MSMg01-084E14.TJ (MSMg01no084_e14.g1)
ACCAG304186AG304187
length1,558715
length of high quality
(start - end)		---611 (68 - 678)
definitionCHROMAT_FILE: MSMg01no084_e14.b1 PHD_FILE: MSMg01no084_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:16 2005CHROMAT_FILE: MSMg01no084_e14.g1 PHD_FILE: MSMg01no084_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAACTGCACTTTATTACATCTATCCTATATTATACCCACACCACTAACAG
TTCAGGCGTTGGCGCGCGATATTTTCGCGAGTAACGCCGTCTCACGCTCG
GTTATGTTATTATACAAACACTCGCACGCGCCTGCCGCGCCCGNCGATAT
TATATACACCCGCCGCTATCGTCCTTCGTGTATACACGTAGTTATTAATT
GATTTCCCGCCGCGCACTAATTTTGCGCGCGCGGTTGCGCAGCTTTGCGC
GCGCATCTTCGCCTTCGCCCCGCCGTTCTAGCGGGTTACAAGCGAGAACT
GTTATACCAATAATTCCACACACTCTTATACGCTTTTGTCGCGCGCGCGG
CGCGTTTATATTGTATGGTATTTCATTTTTCTATACCCCCTCGGCAGTCC
TTTAATTCTTACTCGCGATAAACGTATACACTCGCGCGGGAAGCGAATGT
CTATATATGCTATATATTTATCTATTTTATACACTNTTGTCGACGACCCC
ATTCTTGCTCCGCTCTCTCTGTAGTAAAATAGATCGAGCGGACGAAGTAG
CGGAGACACGTTTTAACCTGCGCGCTGCTCGTGGCGACGCTATTAATACA
TAAAATAATGCGGCGGAGCGTGATTATTAACACGACCACGCGACGCGCGC
CACATACATATTATCTTATATTTATAACTCCGCACACTACCTTATATTTT
TCTCGGGAAACTCCAGGATGTAGGAGACGGTAGGGCGTGGACGCGTGAGG
GGGAGGCTGCATCATTGATATTCAGTCTCGATTTATCTTTATGACACCTT
CTCTGCACTCTCAGTTATCATGTATTTTATATCCACAACATTTCGCACAC
CCGCACCATTATTTGTATTATCGACCTGACGAGCTGGTATATTATATATA
CGGAGGCAGGAGATACGATGACTATACGGATCGCCGACCGTTAGATCGTG
CGAGCAATAATGATGTGACGACGTCACGCGTTACACACGATCTCATTCGA
GCGCCACGTAATTATAGATATGTAGTGCCCGCATCCGTCGCACCCGACGA
TANTTGTTTACCGCCGCGCAGCCGCTGTGTCGAACAGCGCCGCGCTAGCC
TCGTCTCTAGCGCATATTGTATCGATAGCCGATACTGCCTAAACGCGTAG
GTGTAATCAGATATCGTCTGTCGGCACAGGTAGAANCAGTGTCGTTATAT
CCGTCCGCTGTCCGTCATATCAATAATCCGCGCCTACCACGCCGAAATTA
TCATCGGCCTGCGCGTGCGCACATATCATTTANTGTTTGTCGAACACAGA
TAGAGAGACGCGACGATAGTTATATCTCCGCGCCACGTCATCTTGTTTAT
GTGTTCTCTCACGCGCGCCNGCGTTGTGTGATTAACGTGGGGTCGGTGTG
CGTAGATATCCGTTAGATACGACTATANGTAGCGCTATTCACGCGCGTAC
ATATATATTCAATACGCGACCGCCACCTCACGCCACACGACGCTNATATA
TATGCGTCATAGACAGCAGAGATGAACGATATGATATATCGCTCACTATA
CTACACTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTGTGGAACAGCTTGGTCAGCACTCAGGTTGCA
TACTTGCCTAGCTTTCTTCATAAGTTCCTTGCACTTCTGTAACAATCTCT
GTCTGTTGTCATCCAATTCAATGAATTGTTGCTATTAAAAAAAATAATAT
TTCAAAATGTTACTACTAAATCAGAGGCTTGTTGTATAAAACAATCACAT
ATCCAATAAATTGCTGAACTCATTATGATTATGTCACCTGAACCATGACT
TTCTTACTATAAAAATACATTAGCCTTTTATTATGAAGGTAAAAATTTAA
ACTAAACTTTAAAATATCAGAGCCAGTATTTCTTTAATATGTAAGAACTC
TAAAGTTTACTCTTTTGTAAATGTTTAATTTTAATGAAACATTATCATAC
ACAGGCTTCACATAAGAAAACATAGCATCTGAATATAAATTTAAAAAGTA
CTCCTAATAACTTTTCAAATATGTTTTATCTATTTATCATTCATTCATGG
ACTTATTTATTTCCCCAGCAGTTAATTAGCAAGATCTATGAGATACCAAT
CTGTATTAAGTATTGAGTGGTGAATAGAGAAAGACTCACAGAACCATCAT
CCTAACAGAAACAGACATTATCTCCTGAGTACCCTTGGATGAGTGTTCCC
CACCTAAGTTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_e14.g1 MSMg01no084_e14.g1 CHROMAT_FILE:
MSMg01no084_e14.g1 PHD_FILE: MSMg01no084_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:17 2005
         (611 letters)



>mm_chr19_23292707_23293719
          Length = 1013

 Score = 1149 bits (594), Expect = 0.0
 Identities = 608/614 (99%), Gaps = 4/614 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtggaacagcttggtcagcactcaggttgcatacttgcctagctttcttcataagttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtggaacagcttggtcagcactcaggttgcatacttgcctagctttcttcataagttc 260

                                                                       
Query: 61  cttgcacttctgtaacaatctctgtctgttgtcatccaattcaatgaattgttgctatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 cttgcacttctgtaacaatctctgtctgttgtcatccaattcaatgaattgttgctatt- 319

                                                                       
Query: 121 aaaaaaataatatttcaaaatgttactactaaatcagaggcttgttgtataaaacaatca 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 320 aaaaaaataatatttcaaaatgttactactaaattagaggcttgttgtataaaacaatca 379

                                                                       
Query: 181 catatccaataaattgctgaactcattatgatt---atgtcacctgaaccatgactttct 237
           |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||
Sbjct: 380 catatccaataaattgctgaactcattatgattatcatgtcacctgaaccatgactttct 439

                                                                       
Query: 238 tactataaaaatacattagccttttattatgaaggtaaaaatttaaactaaactttaaaa 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tactataaaaatacattagccttttattatgaaggtaaaaatttaaactaaactttaaaa 499

                                                                       
Query: 298 tatcagagccagtatttctttaatatgtaagaactctaaagtttactcttttgtaaatgt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tatcagagccagtatttctttaatatgtaagaactctaaagtttactcttttgtaaatgt 559

                                                                       
Query: 358 ttaattttaatgaaacattatcatacacaggcttcacataagaaaacatagcatctgaat 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttaattttaatgaaacattatcatacacaggcttcacataagaaaacatagcatctgaat 619

                                                                       
Query: 418 ataaatttaaaaagtactcctaataacttttcaaatatgttttatctatttatcattcat 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ataaatttaaaaagtactcctaataacttttcaaatatgttttatctatttatcattcat 679

                                                                       
Query: 478 tcatggacttatttatttccccagcagttaattagcaagatctatgagataccaatctgt 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tcatggacttatttatttccccagcagttaattagcaagatctatgagataccaatctgt 739

                                                                       
Query: 538 attaagtattgagtggtgaatagagaaagactcacagaaccatcatcctaacagaaacag 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 attaagtattgagtggtgaatagagaaagactcacagaaccatcatcctaacagaaacag 799

                         
Query: 598 acattatctcctga 611
           ||||||||| ||||
Sbjct: 800 acattatctactga 813


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1013
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1003
Effective search space:   602803
Effective search space used:   602803
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |