BAC Information

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BAC

Clone NameMSMg01-086E21
Chromosome19 (Build37)
Map Location 35,283,651 - 35,283,906
singlet/doubletsinglet
Overlap genenone
Upstream geneStambpl1, Acta2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464
Downstream geneLOC100042292, A830019P07Rik, Htr7, Rpp30, Ankrd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086E21.T7 (MSMg01no086_e21.b1)MSMg01-086E21.TJ (MSMg01no086_e21.g1)
ACCAG305655AG305656
length739800
length of high quality
(start - end)		421 (43 - 463)---
definitionCHROMAT_FILE: MSMg01no086_e21.b1 PHD_FILE: MSMg01no086_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:00 2005CHROMAT_FILE: MSMg01no086_e21.g1 PHD_FILE: MSMg01no086_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAATCCGCGGAAT
TCCTAGAAAACTATTGCCAATAAACACACCAGAACCAGTGAGAAAAGTCC
TGCTGAAAAGTCCTGAGGACCAGGTTCCTTCTTGCCTTTATAAATTAGCT
AAATAACTCAAGACTGTGGTGTTGTCTCCTATAGACTACATAACTCCAGG
CAAAATTACTCCCCGGAGCTTTTCAAACTTTCTATTTAATGAAAATAATG
GAAGCCCACCTTAAGCAAACTACTAAGTGAAGTGGTAATTTCTGATTTCT
TTTTTTTTTTTAATTTTTTTTTCTTTCCATTTTTTATTAGGTATTTAGCT
CATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCCC
CATTCCCCTACCCGCCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTT
CTGGGGCATATAAAGTTTTGTGTGTCCAATGGGCCTCTCTTTCCAGTGAT
GGTCGACTAGGCCATCTTTTGATTAATATGTCGCTAGAGTCAAGAGCTCC
GGTGTGTTGGTTAGTTCTTAACGTTGATCCCCCTATTGGGTTGCGGATCC
CTTTAATCTCCTGCCTACTTTTTTCTAGTTCCTCATTGGCAGCCCTGCGA
TCCATCCATTTAACTGATTGTGGGCATTCCACTTTCCGTGTTAGCTTAAC
TCCGGCCTATTTCCCTCTGAGTCCTTCATATCAGTTTCC

CCCGCCCCGGGGNNNNNNNGNNNGGTTGCGNCCCCGCCNNCCCACCCAAN
NNCCGATGAAGTGGGTGGCCTGGGGGNCGCCTGGCCGTTCNNGACCCGCN
AACNANAGAAGGGACCTGACCAAAACAGAGGGGNCAANNANAAAGAAAGN
CGAAAGGNCNAAGAAAAGNAAGNAAAACCCGCNNANNNGGANNCCNCAAA
NACANCNGGGAAGNAAAAAGGCNANNNCACAAGAGCAAGGNGAGAAGGGA
NNNGANGANGAAGACCNAAGAAANAAACGGCNNNAANCCCCACGGACAGC
AAGCCAAAAGGAAACCAATGCACAGGACGAAANNNNGNGGAAAGNGGCAC
CCAACNNCGGNCGGCCAGGANNCAGCNNCAAAAATATTTTTTTTCTCGNG
ACNCCCCNGAGGCGACCGGNCAATTNGTTCACACCCCCCAACCCACCAGA
ANCAGCCCNAAACGGCNNCCAAGGGGGCGCCCCAANGGNANACCCAGACA
GCAAAAGGCACCGGGCAACCAGAAAACGCCCNNACAAAAAAAAACAACAC
ACACCACCACCACAAGAAAAAAACAACCGGCGGGCAAAGCGGAGGCCAGG
AAAAGCGGGAACCCCAACCCAAAAGGAAAAAAGGAACCCGGAACCGGGAC
CAGGGAGCGAACCCCCCCAGGGAGGGGGGGAGCCGGGGAAACCCGGGAAG
AACCGGACCCACACCAACAAACCGCCAGGAATTTTTTTTTGTGAACCCCG
GGCACCGGGCTCAGGATAATCAAAACCTGGGAGATCCGGAAATTGCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_e21.b1 MSMg01no086_e21.b1 CHROMAT_FILE:
MSMg01no086_e21.b1 PHD_FILE: MSMg01no086_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:00 2005
         (421 letters)



>mm_chr19_35283447_35284267
          Length = 821

 Score =  464 bits (240), Expect = e-135
 Identities = 252/256 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctagaaaactattgccaataaacacaccagaaccagtgagaaaagtcctgctga 64
           ||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gaattcctagaaaactaatgaaaataaacacaccagaaccagtgagaaaagtcctgctga 401

                                                                       
Query: 65  aaagtcctgaggaccaggttccttcttgcctttataaattagctaaataactcaagactg 124
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aaagtcctgaggaccaggtcccttcttgcctttataaattagctaaataactcaagactg 341

                                                                       
Query: 125 tggtgttgtctcctatagactacataactccaggcaaaattactccccggagcttttcaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tggtgttgtctcctatagactacataactccaggcaaaattactccccggagcttttcaa 281

                                                                       
Query: 185 actttctatttaatgaaaataatggaagcccaccttaagcaaactactaagtgaagtggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 actttctatttaatgaaaataatggaagcccaccttaagcaaactactaagtgaagtggt 221

                           
Query: 245 aatttctgatttcttt 260
           ||||||||||||||||
Sbjct: 220 aatttctgatttcttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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