Query= MSMg01no086_k01.b1 MSMg01no086_k01.b1 CHROMAT_FILE:
MSMg01no086_k01.b1 PHD_FILE: MSMg01no086_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:26 2005
(602 letters)
>mm_chr19_13808554_13809555
Length = 1002
Score = 1118 bits (578), Expect = 0.0
Identities = 596/602 (99%)
Strand = Plus / Plus
Query: 1 tttatattaccaccttaactgaaagaaaatattgtgcacaaacttgctatctaaaggatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatattaccaccttaactgaaagaaaatattgtgcacaaacttgctatctaaaggatt 260
Query: 61 ttttcccctatattgtgacgagaaccccaagagatgcccataaaattcattggctatcag 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 ttttcccctatattgtgacgagaacctcaagagatgcccataaaattcattggctatcag 320
Query: 121 agtatcaggttttaaaaccactaatttgggaggttgtttaacagattttgtttttacaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtatcaggttttaaaaccactaatttgggaggttgtttaacagattttgtttttacaat 380
Query: 181 ataagaagtattttagttaaatgttgttttttagcaagggaatggattgtaaagcacaga 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataagaagtattttagctaaatgttgttttttagcaagggaatggattgtaaagcacaga 440
Query: 241 tttgtacaaatagtgttgagttggaataaaaactgtactttggtattaccttagtatctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgtacaaatagtgttgagttggaataaaaactgtactttggtattaccttagtatctt 500
Query: 301 aaataaaaatgaggtaataataaagaaaaaggtatttttgtttatttgtttgtttgattg 360
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 501 aaataaaaatgaggtaataataaagaaaaaggtatttttgtttgtttgtttgtttgcttg 560
Query: 361 tttttgttttgtagagatgtaaaaatcacagcagaattttgaataaagagataggactag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttttgttttgtagagatgtaaaaatcacagcagaattttgaataaagagataggactag 620
Query: 421 cagatttgcatttttaataactcttcttacaccagaaaaacccattggagagaaatgatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagatttgcatttttaataactcttcttacaccagaaaaacccattggagagaaatgatt 680
Query: 481 tattcagacttcctattgttgtactatcagcaaacaatcttgtactggtgtatttgaaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 tattcagacttcctattgttgtactatcagcaaacaatcttgtactggtgtgtttgaaag 740
Query: 541 attgaacattagggaaaattatggacttgacatgggatccatttggaccaacatgttttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 741 attgaacattagggaaaattatggacttgacatgggatccatttggaccaaaatgttttt 800
Query: 601 gg 602
||
Sbjct: 801 gg 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no086_k01.g1 MSMg01no086_k01.g1 CHROMAT_FILE:
MSMg01no086_k01.g1 PHD_FILE: MSMg01no086_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:27 2005
(630 letters)
>mm_chr19_13886385_13887411
Length = 1027
Score = 1168 bits (604), Expect = 0.0
Identities = 623/630 (98%), Gaps = 3/630 (0%)
Strand = Plus / Minus
Query: 1 aaagagatgactaactagctttctgttaattgattctgtgttaagcacttgggccatgta 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 aaagagatgactaacaagctttctgttaattgattctgtgttaagcacttgggccatgta 768
Query: 61 aagctaataaacattgcaatatgttttgtgaatgcagaaacaaggaaaatcaaacatgga 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 767 aagctaataaacattgcaatatgttttgtgaatgcagaaacaaggagaatcaaacatgga 708
Query: 121 aaacagttgatccaagcatagaatatataaatgacttgtagaattaaaaggaaagttaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 aaacagttgatccaagcatagaatatataaatgacttgtagaattaaaaggaaagttaat 648
Query: 181 ttacataataatcaggactttcacatttacaacttcaattttatgacttgcttcataaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ttacataataatcaggactttcacatttacaacttcaattttatgacttgcttcataaaa 588
Query: 241 attaaaaggattatgtccttatattagcagaagtgtttctattggtgggtataattttgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 attaaaaggattatgtccttatattagcagaagtgtttctattggtgggtataattttgt 528
Query: 301 ttaatgactatatcaatagtttgatattttcatatgaaaactcaaaccacacaatgagca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ttaatgactatatcaatagtttgatattttcatatgaaaactcaaaccacacaatgagca 468
Query: 361 atatagctaaaccaatggcctgaatatacacttaaaaaaactcttggtcagggacattaa 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 467 atatagctaaaccaatggcccgaatatacacttaaaaaaactcttggtcagggacattaa 408
Query: 421 gatatggataattttttttttcatagaatgttgctgtagaaactcatcacccagaacatt 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 407 gatatggataa--ttttttttcatagaatgttgctgtagaaactcatcacccagaaca-t 351
Query: 481 ttttcttccatgttcattcttccacttctgagtgttcatgctttggcttgaaaaagatgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ttttcttccatgttcattcttccacttctgagtgttcatgctttggcttgaaaaagatgt 291
Query: 541 cattttagactataaagtgaccttgatggtgaaagaaatacatagataaggtaaccattt 600
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 catttcagactataaagtgaccttgatggtgaaagaaatacatagataaggtaaccattt 231
Query: 601 ggggtatctgcttctctctaaatgtaggta 630
||||||||||||||||||||||||||||||
Sbjct: 230 ggggtatctgcttctctctaaatgtaggta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1027
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1017
Effective search space: 630540
Effective search space used: 630540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
