BAC Information

Click to search

BAC

Clone NameMSMg01-087B01
Chromosome19 (Build37)
Map Location 20,169,035 - 20,169,138
singlet/doubletsinglet
Overlap genenone
Upstream geneRorb, LOC100042218
Downstream geneLOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087B01.T7 (MSMg01no087_b01.b1)MSMg01-087B01.TJ (MSMg01no087_b01.g1)
ACCAG306201AG306202
length925706
length of high quality
(start - end)
---104 (129 - 232)
definitionCHROMAT_FILE: MSMg01no087_b01.b1 PHD_FILE: MSMg01no087_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:02 2005CHROMAT_FILE: MSMg01no087_b01.g1 PHD_FILE: MSMg01no087_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAATATTTGCCNCCNCTAATACNACTCCCTTTTTCCANANNATCCNNCNA
AATTCTTNNNCTTTTCCCNNACTGTTNNNCNNTTNNTANNNNNNNTATTC
CCCAAAACCCCNTTCCTANNNNNNNNTCNNCTACNCNNNNANCTGCTTTG
ATTTCCCTNNCCCTGANNNNACCTGANTTCCCNNCCCCCNNNAACACACC
TTGNNCTTNTCATCCCTCNCCCCCTCTTCTTTTTTTTTTTCTCCCCCCCC
CNCCCCCCCCCCCCCCCCCNNCCTTCCCCTTCNNCCCCCCCCCCTCTTCC
CCTTTTCCCCTNCCTTCTCTCTNNCCCTTTNCTTCCTTTTNTCCTCTTTC
TCCTTTTCCCCTCCCCCCTTCCCTCNCCCCCCCTTTCCCTTCCCTTCTCC
CCCCTTTCCCCCTCTTCTCTTCCCCCCCCCTCTCCCTCTTTCTTTTCCCT
NCCNCCTCTTCCCCCCTCCTCCCCCCTCTCCCCCTTCTCTCTCCCCCCCC
CTCACTCTTTGGGGCGGCGGGTGGGCANNTCCCNCCATGCCCCTCCCTCT
CTTTTTTTTTCTTCACGGAGCGAAAGAGGGATGCGGAGAGGAGAGAGGGG
AAGGAGGAGAGGGGAGGGAGAGGGGGNTNTCTCTCCNCCCNNTTCTCCCC
CTCTTTCTTTTCTTCCCCTCCCTTTTTCCCCCCCTTCTTCTTCCCCCCCC
CTCCCCCCTTCTCCCTNTCTTAGCTTTCCTNTNCTTCTNTTACCCTCCCG
TCACGGGGGAAGGGGGAGAGGGCTCCCCCCTTCTCTCCCTTTTTTTCTCT
CTCCTCCCCCCCTCTCNCTCCTTCCTCCCCCTCTTCTTTCCCTTCTTTCC
CCCCCCCTNTTTCTCCTCTTTCTCCCTCTTNNTCCCTCTTTCNTTCTTTC
CCCCTCTTTCCACCCCTCATATCTG
CTATCATGCAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTGTCCTTTCTATCAAATGTCCAACT
CTCCAAGATAGGGAGAATTGCATTTTCAACAATTATGGAAGTTTTATGGC
ATGTTTTATTAGTCTTAAATAATCATGTGGATGCATCTATTATGGGTACT
TATATGATTTATAATACAGTTAAGCTTCTTGGTAGCATCAGAAGATCTTG
GAGCAAATACTAAAGTTTTTTTTTTCACTGCCCTTGCAATGTTCCACAGC
TTTGACCCCTATAATTACTTTTTTATGATTGCATGAAAGATTCTCCTTCA
ATTCCTATCCTACAAAAAAATTTAATTTCCCCCATTTCCCTTGTATAAGC
CAGCATTCTCTCTTCTATCTTCCCACCCCGTATTTCCCCTTCCCTCCGTG
GCGCATCCAATCGTCCCACCTAATTTTTTTTTAACCCTCTGTATCGTTCC
ACATAGGCATTTTTGTCATCCTCTTATTGTGCCTTGTCCTGTACCCCCTT
CTTTAGATTCTTCTGCCCCCCCCTTATTTTCTCCCCACTATATCCTTCCT
CGGCCTTTGTTCTGTTATACACTCTCCATTCGCATCCCTTTTCATTTTCC
TATTAAAAGATTTACCTCTCTCCGCCCTATTTTATCTCCCCCCTCCACCT
CCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_b01.g1 MSMg01no087_b01.g1 CHROMAT_FILE:
MSMg01no087_b01.g1 PHD_FILE: MSMg01no087_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:02 2005
         (104 letters)



>mm_chr19_20168835_20169338
          Length = 504

 Score =  178 bits (92), Expect = 8e-50
 Identities = 101/104 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaattatggaagttttatggcatgttttattagtcttaaataatcatgtggatgcatct 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 acaattatggaagttttatggcatgttttattagtcttgaataatcatgtggatgcatct 260

                                                       
Query: 61  attatgggtacttatatgatttataatacagttaagcttcttgg 104
           |||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 261 attatgggtatttatatgatttataatatagttaagcttcttgg 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 104
Length of database: 504
Length adjustment: 8
Effective length of query: 96
Effective length of database: 496
Effective search space:    47616
Effective search space used:    47616
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)