Query= MSMg01no088_a22.b1 MSMg01no088_a22.b1 CHROMAT_FILE:
MSMg01no088_a22.b1 PHD_FILE: MSMg01no088_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:24 2005
(595 letters)
>mm_chr19_34427222_34428211
Length = 990
Score = 1050 bits (543), Expect = 0.0
Identities = 580/595 (97%), Gaps = 5/595 (0%)
Strand = Plus / Minus
Query: 1 aagtgtggttccaggaaaggatccacactgcctggctctttatccaactcggcttgagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 aagtgtggttccaggaaaggatccacactgcctggctctttatccaactcggcttgagct 731
Query: 61 ggcagcttcagattctctgggaagcccctgagtagctttggagagctgcttgtacaaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ggcagcttcagattctctgggaagcccctgagtagctttggagagctgcttgtacaaaag 671
Query: 121 ggtaattactgtcattaaaaacaattaatgtttgggttcctgagtgatctgagtgattct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ggtaattactgtcattaaaaacaattaatgtttgggttcctgagtgatctgagtgattct 611
Query: 181 gggaggaggaaaatatttgttaaagctgggtctgtttactcgagggaaaactagaaacgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gggaggaggaaaatatttgttaaagctgggtctgtttactcgagggaaaactagaaacgc 551
Query: 241 atatttggtaacgacagcaacaaaatgagcaataggaaaagaaaagaagaatgctcaaat 300
| | ||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 550 agagatggcaacgacagcaacaaaatgagcaatag-----gaaaagaagaatgctcaaat 496
Query: 301 gattattatttattatggatgttggggtgatttatattttattcttaatgctgcttccct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gattattatttattatggatgttggggtgatttatattttattcttaatgctgcttccct 436
Query: 361 ttaagacagaaacaaacttggaagaaaaacagaggtctttgttacttggaatcacactcc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 435 ttaagacagaaacaaacttggaagaaaaacagaggtctttgttacttggaatcacagtcc 376
Query: 421 tagcttctgtttttacttctgaatatcagtctgcgttatttgctttatttaactcatctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 375 tagcttctgtttttacttctgaatatcagtctgcgttatttgctttatttaactcctttg 316
Query: 481 tctgatgaggttttgtttcctcccttatgattcagagtcttaaatctgaattaagtaatg 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 315 tctgatgaggttttgtttcctcccttatgattcacagtcttaaatctgaattaagtaatg 256
Query: 541 acaagaccttagtataaagttcaagcttcacagacttttaatttccctccggatc 595
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 255 acaagaccttagtttaaagttcaaccttcacagacttttaatttccctccggatc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 990
Length adjustment: 10
Effective length of query: 585
Effective length of database: 980
Effective search space: 573300
Effective search space used: 573300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no088_a22.g1 MSMg01no088_a22.g1 CHROMAT_FILE:
MSMg01no088_a22.g1 PHD_FILE: MSMg01no088_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:24 2005
(289 letters)
>mm_chr19_34310632_34311320
Length = 689
Score = 543 bits (281), Expect = e-159
Identities = 287/289 (99%)
Strand = Plus / Plus
Query: 1 gatgtgtagaacgtctaagaattattcaatgttcaggatcaacatggtctcctcacactg 60
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatgtggagaacgtcgaagaattattcaatgttcaggatcaacatggtctcctcacactg 260
Query: 61 ggatggatccatgtatgtttggccctttgtgttttggttttattttgtatggtgtgttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatggatccatgtatgtttggccctttgtgttttggttttattttgtatggtgtgttgt 320
Query: 121 tttcttcatacagaaatttgagtggatttaaataatttcttgtttttatattttcccaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcttcatacagaaatttgagtggatttaaataatttcttgtttttatattttcccaga 380
Query: 181 ggtagtaagtatcatgatatcaaagcaatttattcaatgccaagctgtgtataaatctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtagtaagtatcatgatatcaaagcaatttattcaatgccaagctgtgtataaatctgt 440
Query: 241 cacatttgggtttgaaaggggtattctacacttatgtttttcactcaga 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacatttgggtttgaaaggggtattctacacttatgtttttcactcaga 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
