BAC Information

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BAC

Clone NameMSMg01-089G05
Chromosome19 (Build37)
Map Location 36,590,792 - 36,591,023
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042292, A830019P07Rik, Htr7, Rpp30, Ankrd1, LOC668195, Pcgf5, LOC668201
Downstream geneHectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1, Cpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089G05.T7 (MSMg01no089_g05.b1)MSMg01-089G05.TJ (MSMg01no089_g05.g1)
ACCAG307899AG307900
length708775
length of high quality
(start - end)
134 (45 - 178)235 (188 - 422)
definitionCHROMAT_FILE: MSMg01no089_g05.b1 PHD_FILE: MSMg01no089_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:10 2005CHROMAT_FILE: MSMg01no089_g05.g1 PHD_FILE: MSMg01no089_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCCTATATCCAGAGGATCCGCGGAATTCATAATGCATTCCATGGTGGC
TTGATAAATTTAGAATTATTTCACATCAATTCCTGCTGCCTTTTGTGTTT
ATGTGAGAGTCTCACTAAAAGCATATATGATTTATTCTCTTAAAATGTGA
TTTCCTTCATTTTTGTCTTTCTATGTACAGCAAGTCTGTGTCTATAAATA
CAATTACTGCCAAGATTCTTGCATTGTTGGTCATCTTTCCCCATTAGCAT
CTAGGTAATCTATTTAGATTATACCGCATTTGATCCTCCTGTTTTCCTGA
TGGATGGCTTGCCCTTGTGTCCTTGGTTCCTAAGTAGCCCTTCGAGAGTG
ACTTTTAAAGATTTATCGTTCTAGCTCCTTGTTTATTGTCCCCTGCCCAC
GATCACTGTTCCCCGATGTGATGTATCTTTGGTACTAGTTTAATACCCTC
CTTTTTTGTTTTCCCGTTCACATCCTTTTTAGATAGCATGTATCCTTTTT
AAGCACATAATCTGACCACTACTTTTCCCCTTCCCCCTCTCCCCTTTTTT
TTACTCCTTCTTGTTTTTTTTTTCGGTTTTTCTTCCCCATTTTCTCCTTT
TTTTCCCATTTTTCCCTTTCCCTTTACCCCCCTATCCTCATTCTTTTTTA
TCTTTTTTTATCCCCTCTTTTCCCCACTTCTTTTTTATTTTCCCCCCCCA
CCCCCTCT
TTTTNNNNNNNNNNCCNNNNNNNNNNNNTTTTTTTTTTCTTNCCCCNCCN
NNNNNNNTTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCTGAGAAAAGCT
AAAGAGAAGTCAGACTCAAGAGGTTGGAATTCCCCCGGCTACAACCAGAA
AGTAGAGTGGATTTAGGGTCAGTGAAGGAGTTCAGCTCGCATTGCAGGGC
TGACTAAGGCAAAACACTAGATTGAATCCAAGCCTGAGGCTAGAAATGCT
CTAGATCCGATATTTTAGCCCTGTCAGTACACTGGTTTCTAGGTTCTTTC
AGCTGTGAACCAAACCACCCATGACCTGCTTGGGCATCCATGTAATCTCT
CAGAGACGTTCCCCCCAAGTTCTTGTTTCCAAGCCTATTTATATTTGCTC
TGTCACTGAGAAAAGTTATGCAGAGTACAATGAATCTACATCCAGGTGCA
GCAGCCCAGGGATCCAGAGACCTCTCACCTACTTAAAGGTGCAGGATAGG
GTTAGTTCATCTGGTAATTGGGACCTTCCTAGCCTCCTTATTGTAGACTG
AGATCCCCAGGAATTCGGACTCTGAGATGAAAGCTGGTCTAGTATGATAA
ATTTTACCGGTTTCTACTTGCCGAAAAATCTGTGTGATGTTTGCATAATG
TCGGTGTTTTTGTCCCGATTTATAGATATGAGCCCTACGGCCCTGTTCTT
CTTGTTTTCCAGTCTTTTTTCAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_g05.g1 MSMg01no089_g05.g1 CHROMAT_FILE:
MSMg01no089_g05.g1 PHD_FILE: MSMg01no089_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:10 2005
         (235 letters)



>mm_chr19_36590592_36591226
          Length = 635

 Score =  433 bits (224), Expect = e-126
 Identities = 230/232 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctacaaccagaaagtagagtggatttagggtcagtgaaggagttcagctcgcattgcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gctacaaccagaaagtagagtggatttagggtcagtgaaggagttcagctcgcattgcag 373

                                                                       
Query: 61  ggctgactaaggcaaaacactagattgaatccaagcctgaggctagaaatgctctagatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 372 ggctgactaaggcaaaacactagattgaatccaagcctgaggctagaaatgctctagatt 313

                                                                       
Query: 121 cgatattttagccctgtcagtacactggtttctaggttctttcagctgtgaaccaaacca 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cgatattttagccctgtcattacactggtttctaggttctttcagctgtgaaccaaacca 253

                                                               
Query: 181 cccatgacctgcttgggcatccatgtaatctctcagagacgttccccccaag 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cccatgacctgcttgggcatccatgtaatctctcagagacgttccccccaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)