BAC Information

Click to search

BAC

Clone NameMSMg01-089I20
Chromosome19 (Build37)
Map Location 36,307,495 - 36,307,636
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042292, A830019P07Rik, Htr7, Rpp30, Ankrd1
Downstream geneLOC668195, Pcgf5, LOC668201, Hectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1, Cpeb3, March5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089I20.T7 (MSMg01no089_i20.b1)MSMg01-089I20.TJ (MSMg01no089_i20.g1)
ACCAG308022AG308023
length682881
length of high quality
(start - end)
261 (10 - 270)153 (137 - 289)
definitionCHROMAT_FILE: MSMg01no089_i20.b1 PHD_FILE: MSMg01no089_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:23 2005CHROMAT_FILE: MSMg01no089_i20.g1 PHD_FILE: MSMg01no089_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGATCCGCGGAATTCTCTGCTCCTCTTGACCATGCCTGCCTGGATGCTG
CCATGTTCCTGCCTTGATGATAATGGGCTGAACCAGTAAGCCAGCCCCAA
CTAAATGTTGTCCTTATATGAGTTGCCTTGGTCACGGTGTCTATTCACAG
CAGTGAACCCAAACTAAGACAGGGTGTTTCTCAAGCTTTTGTGATAGGAG
GGGGTAAGGGAGTCTGTGCTATGGAAAGCCACACTAATTACTTTATCACC
TCACTTCCTCATTTGCCAGACAGGATGGCTCTATTTGTATCTCTAAGGCT
TCATCTATGAGACCTACAAAATTTTTGTTTCCCCCCCCCCACCGACCATA
AACTTTATTTTTTTCTATAACTGAGAGCCAAACAAACATAAACAAATAAA
ATCCCTCATTTACTTTTACTTTGTATGCGTGAGTGCTTGCCTACTTGTAT
GTTCTATGCATCCGCCTGCCTGCCTGCAGTCCAACGAATCTATCATACAG
TATTTGATTCCCCGCTATTGTTTTCTTTCCCCCCCGTGTACCTTCCCTCG
TCACCTCGTTATTCCCCCCTTGTCTCTCTTTATTCTCTGCCATATCTTAT
TAAGTCCTGCTTCCCTCTACCTCTCCCCTTTGGTCCCTTTTTTGCCCATA
TACTCTCCCGATTCCTTCGACCTGCCTTCCCC
TGGTTTCTTTGTTGTGCGTTTTTCCTTGTGTCTCNCCCNCCTTCCCCCCC
CCNNNNNNATACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGCCTTGAGACA
AAGCATCAGAAGCTATGGAAGAAGGCCAGCAGGCTGGCTGGAGACCCTCT
GTGACAGCGACCCTCTGTGACATTCTGATTCTGGATGGCAATTTTGCTTC
TGTTCTTTTGTTTGTTTGTTTGTTTGCTTGTTTGTTTGTTTGCTTGTCCG
TTTCCCCACACAGGTTTCCTTTGATCACCCTTGTCTGTTCAGCATTTCTT
TCCGCTTTATTCCTCTGCCCTCCAATTCAGAAATTCTTCTCCCTCTCGCC
ACTTTAATGATGTAATTAAATGGCATTATTTTTTTTTCCCCCCCCCCCCA
CCCCCCCTATCCCTTCTCCCTTTTTCCTTTTATTTTTCTTCCCATTTCAT
ACCAAACATAAAATCCTTTTTCCTCCCTGGGTCGCCTGTATCCTCCCTCC
TTCCCTTTCCTTACTTTCCAATCTTATATTTTCTTCTCTTTCTCATCCTT
TACTTCTATATTCTCTCCCCTTTTTCCCCATTTTCGTTCCTTTCCTTTCC
TCGCCCCCCCCACCCCCATACCCCTTTTTTACCTACCACCTCCATTTCCA
CCCCCCCCCCCCATTCCCTCTTTCTCTTTCTCCTTCCCCTTTCCTATATA
TTTTTTTTCCCTCCGCATACCCATTTATCCCCCGCTATTCTCTCTTTCCC
CCTTTCATTTATTCTTTCTTACCCATATTACTACTTTTACATTTTCTCGC
CCCCCCTTTTTTCCCCTTTTTTCCCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_i20.g1 MSMg01no089_i20.g1 CHROMAT_FILE:
MSMg01no089_i20.g1 PHD_FILE: MSMg01no089_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:24 2005
         (153 letters)



>mm_chr19_36307295_36307847
          Length = 553

 Score =  240 bits (124), Expect = 3e-68
 Identities = 137/142 (96%), Gaps = 3/142 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagccttgagacaaagcatcagaagctatggaagaaggccagcaggctggctggagacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagccttgagacaaagcatcagaagctatggaagaaggccagcaggctggctggagacc 260

                                                                       
Query: 61  ctctgtgacagcgaccctctgtgacattctgattctggatggcaattttgcttctgttct 120
           ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 ctccgtgacagcgaccctctgtgacattctgatcctggatggcaattttgcttctgttct 320

                                 
Query: 121 tt--tgt-ttgtttgtttgttt 139
           ||  ||| ||||||||||||||
Sbjct: 321 ttcgtgtgttgtttgtttgttt 342


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 553
Length adjustment: 8
Effective length of query: 145
Effective length of database: 545
Effective search space:    79025
Effective search space used:    79025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)