BAC Information

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BAC

Clone NameMSMg01-090I09
Chromosome19 (Build37)
Map Location 36,487,727 - 36,488,009
singlet/doubletsinglet
Overlap genePcgf5
Upstream geneLOC100042292, A830019P07Rik, Htr7, Rpp30, Ankrd1, LOC668195, LOC668201
Downstream geneHectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1, Cpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090I09.T7 (MSMg01no090_i09.b1)MSMg01-090I09.TJ (MSMg01no090_i09.g1)
ACCAG308731AG308732
length668702
length of high quality
(start - end)
287 (19 - 305)286 (56 - 341)
definitionCHROMAT_FILE: MSMg01no090_i09.b1 PHD_FILE: MSMg01no090_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:42 2005CHROMAT_FILE: MSMg01no090_i09.g1 PHD_FILE: MSMg01no090_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTGTTACCTCTGAGCCCATTTTTAATGGGGTTATTTGATTTTCTGGAG
TCTACTTTCTTGAGCTCTTTATATATATTGGATATTAGACCCTTATCTGA
TTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCT
TATTGACGTTGTCTTTTGCCTTACAGAAGCTTTGCAGTTTTATGAGGTCC
CATTTGTCGATTCTCGATCGTACAGCACAAGCCATTGCTGATATGTTCAG
GAATTTCCCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCAATTTCTCCT
CTATTTTTTTCACCGCCTCCCCCTTTATGTGGAGTTCCTTGATCCACTTC
GATTTGCCCCCACTACAAGAAAATAGGAATGGATCAACTCGCATTCTTCT
ACATGACAACTGCCAATTGTGCCAGCACCATTTGTTGAAATGCTGTCTTC
TTTCTCACTGGCTGGTTTTACGCCCCTTGTTAAGCACTACCGCACTAAAT
TGTCGTCGTTCATTCCTTGTCTCTTCCCATTTATTCTATCTGCTCTACTT
TCCTTGTCCTCGATTGTCTTTTCTACTTAACCCTCTTTTTATTGTTTTCC
ATCTTGTATGTCCTCCTTTTCCCACTGCTCATCCATAAATTATTTCTCTG
TATGCCATTACATTCCCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXACATGCAAAGCTGTTCAGTTTCTATGCTTTTTTTCATAATTTCCG
TCCAACGTGCTCCCTCCCTCACGAATGGATAGACTATACCCACAAATGAA
TGAGCCAGATAGAATCACTAGAAAATTAAAATGATAAATGTTATGTTATA
TATAGTTTAATCACAGTTTTAAACACAGAATTTTACTGAAAGCTGTTTGA
ACATACTGAGACCTGATGGGTCTTGTGGTCAGGTCTGGTTACATATACTG
TGGAAAAGCTATCTAGTGGTATTGATGAATACTCCCCTGTTTTGTTAACT
GCCTCACGCTGTTCATTAGCAGTTAACTATGAAATGTCTTCTATGGTAAT
TTGTCCTTGCCTTGTATTTAATTTGAACAATTAATAATTAACTGTCATTG
AAAACATGTATTGACTGCCTACTACGTGTCAAGTGCAGTGCTAAATACTG
ATACATTCTAGGAAGGGAAACGTAAATAGATTCAATATTTATTGGTGACG
AAGGGCATGAAAAGGAGCCGATTGTACGCAGGCCCAGGGTTACTTTATAT
GATGTCATGTCAACCTCCTCTGTGCTGCTTATTCAGAAACCTTTAAGTGG
TTGAGCGCTACATGGTAAAACCTTTTTAAAGAGATATTACCGATGTATAT
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_i09.g1 MSMg01no090_i09.g1 CHROMAT_FILE:
MSMg01no090_i09.g1 PHD_FILE: MSMg01no090_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:42 2005
         (286 letters)



>mm_chr19_36487527_36488211
          Length = 685

 Score =  526 bits (272), Expect = e-154
 Identities = 281/284 (98%), Gaps = 1/284 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatgcaaagctgttcagtttctatgctttttttcataatttccgtccaacgtgctccct 60
           ||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||
Sbjct: 201 acatgcaaagctgttcagtttctatgc-ttttttcataatttccgttgaacgtgctccct 259

                                                                       
Query: 61  ccctcacgaatggatagactatacccacaaatgaatgagccagatagaatcactagaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccctcacgaatggatagactatacccacaaatgaatgagccagatagaatcactagaaaa 319

                                                                       
Query: 121 ttaaaatgataaatgttatgttatatatagtttaatcacagttttaaacacagaatttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttaaaatgataaatgttatgttatatatagtttaatcacagttttaaacacagaatttta 379

                                                                       
Query: 181 ctgaaagctgtttgaacatactgagacctgatgggtcttgtggtcaggtctggttacata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctgaaagctgtttgaacatactgagacctgatgggtcttgtggtcaggtctggttacata 439

                                                       
Query: 241 tactgtggaaaagctatctagtggtattgatgaatactcccctg 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tactgtggaaaagctatctagtggtattgatgaatactcccctg 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 685
Length adjustment: 9
Effective length of query: 277
Effective length of database: 676
Effective search space:   187252
Effective search space used:   187252
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)