BAC Information

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BAC

Clone NameMSMg01-091I07
Chromosome19 (Build37)
Map Location 31,183,116 - 31,183,246
singlet/doubletsinglet
Overlap genePrkg1
Upstream geneGldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1, LOC625995, Cstf2t
Downstream gene8430431K14Rik, 1810073H04Rik, Asah2, EG668042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091I07.T7 (MSMg01no091_i07.b1)MSMg01-091I07.TJ (MSMg01no091_i07.g1)
ACCAG309448AG309449
length699693
length of high quality
(start - end)
131 (122 - 252)359 (123 - 481)
definitionCHROMAT_FILE: MSMg01no091_i07.b1 PHD_FILE: MSMg01no091_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:03 2005CHROMAT_FILE: MSMg01no091_i07.g1 PHD_FILE: MSMg01no091_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTATGATTTCCCACAGAAGAGGCATTTCCTTCTAGAAACTACAAGCCAA
TGAACATTTGTGATTCTTCCTCTGAAAGCTCTGCACTCCGTGCTTGTCAC
TTCCAGTCATTTCTGCAATCGGTCATCCTGTCAGAGATCATGTGAGAGAA
GGTGGGACCAGAGGGTCGCCAAGACATGTGTCTACCGTGCAGCCAGATGT
AGTGGTACAAGCCTGTAACCTGTACCTGGAAAGGTAGAGGTAGAAAGAGC
AGGGGTTCAAGGCCAGTTTCTTCTTACATAGAGAATTTACAACCAACCTG
GACTCCATGATACTCTCACAACACAACCAACCATAACCTCAATACAAATA
ATCATATCAGCCACCTCATGCTTGCACTTCCCAATAAAATAGCAACTTAA
GCTCACTTTCCTATTTAACTTTTACTTTGAGTTGAGTGTCTTTACTTCTG
AGCTAAGTGGCTTTAACTCATGAACGCGATCCTTTGGTCAGTCTATCTAC
ATGTCCTTGTTGTAGGGTCTTTTCTATACATTATCCCCACCTCGGTATGA
TCCTCTGCCACAGTTCGTTCCTGCTGGACAATCCTGGATAGACCATCCCC
TTTTTCTTTCCATACCTTACTAATTCCTCCTCCCTACTTTCACACCCCT
CATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAATAACTCACTTAAAGAAATACAGGAGAA
CACTGCTAAAGAGTTATTAGCCCTTAAAGAAAAACAGGAAAACACTGCTA
AAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACAACCAAACAGGTA
GAAGTCCTTATAGAAAAACAGGAAAACACATCCAAACAGGTGATGGAAAT
GAACAAAACCATACTAGACCTAAAAAGGGAAGTAGACACAACAAAGAAAA
CCCAAAGTGAGGCGACGCTGGAGATAGAAACCCTAGGAAAGAAATCTGGA
ACCATAGATGCCAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAAT
CTCAGGTGCAGAAGACTCCATAGAGAACATCGGCACAACAATCAAAGAAA
ATGGAAAATGCAAAAAGATCCTAACTCAAAACATCCAGGAAATCCAGGAC
ACAATGAGAAGACCAAACCTACGGATAATAGGAGTGGATGAGAATGAAGA
TTTTCAACTCAAAGGACCAGGCAAAATCCTCCACAAAATTATTGAAGAAA
ACTTCCCCAAATCCTAAGAAAGAGATGCCCATGAACATACAAGAAGCCTT
AAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_i07.b1 MSMg01no091_i07.b1 CHROMAT_FILE:
MSMg01no091_i07.b1 PHD_FILE: MSMg01no091_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:03 2005
         (131 letters)



>mm_chr19_31182916_31183446
          Length = 531

 Score =  223 bits (115), Expect = 5e-63
 Identities = 127/131 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgaaagctctgcactccgtgcttgtcacttccagtcatttctgcaatcggtcatcctgt 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctgaaagctctgcactctgtgcttgtcacttccagtcatttctgcaatcggtcatcctgt 272

                                                                       
Query: 61  cagagatcatgtgagagaaggtgggaccagagggtcgccaagacatgtgtctaccgtgca 120
           ||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 271 cagggatcatgtgagagaaggtgggaccagagggtcaccaagacgtgtgtctaccgtgca 212

                      
Query: 121 gccagatgtag 131
           |||||||||||
Sbjct: 211 gccagatgtag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 531
Length adjustment: 8
Effective length of query: 123
Effective length of database: 523
Effective search space:    64329
Effective search space used:    64329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)