BAC Information

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BAC

Clone NameMSMg01-092G10
Chromosome19 (Build37)
Map Location 28,430,572 - 28,430,759
singlet/doubletsinglet
Overlap geneGlis3
Upstream geneD19Bwg1357e, LOC667868, LOC100042612, Rfx3, LOC666997, LOC433235
Downstream geneEG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092G10.T7 (MSMg01no092_g10.b1)MSMg01-092G10.TJ (MSMg01no092_g10.g1)
ACCAG310098AG310099
length720726
length of high quality
(start - end)
188 (69 - 256)34 (87 - 120)
definitionCHROMAT_FILE: MSMg01no092_g10.b1 PHD_FILE: MSMg01no092_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:15 2005CHROMAT_FILE: MSMg01no092_g10.g1 PHD_FILE: MSMg01no092_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ATTTTTCCCCTGATTTGAGGTACTCTTGGAGAAAGCTTGACTATAACCAG
TCCTCACACCTGGTCTTGAGCCCTTCCTCTTGTGTCTGCCATCTTGGACC
AGGATGCCCAAACAGCTCTCAAGCTCTGGTGTGAATAGTCGTGGTATCCC
CATCATTCTATCTCTGATTATTCAAGCCTAAAATGGCATGCTACATGCCC
TCAGAAAAGGTATTTCATTATTTTCCAGCTGTCCTGAGTAATTACTTCCC
TTGTTTAGATTTATTATGTTAATAGAGAAATTGTATTAATGAAAAATTCA
GGGTTATTTTAATGAACTCAATAATCTTTGTGGTAAGACCATTTTTCTCA
ATAAAGAACCCGCTTTATTTGAAAATATATTTCTGATGCACAAATCTTGT
CAGCTTTTGTTTAACGATTGATTAGTGTAAAGCAACCTACACTTAAGCTA
TCACTTCTTCCTACAGCTACCGTTTGCTTTTGTAAAACTATCTGTTGATC
TCTATAATTTTTTTAATAGTTTAATATTTTATTACAAGAAACTACCTTTT
CCCGACAATGTATCTTGCCCTCCTACTTATAACCCCTATTCTTTACCCCT
GTCATAAATAATATCCTTCTTAATAAGGCACAACTGACCGGCCTTTCAAT
CTTAAGTTCTGCAATCCATG
ATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCCAGTTAGGGGAATGGGACTGACGAGGCTTTC
CAGTCAGCTTGATCTGACATGACTAAGGGATGCATCTTTGAGGTTAATGG
ATTAAAATTCAAGTGGAAAGTGACCCACATCCCCAGGAGTAACGCTCCTC
GCTGAGCGCTAAAGATGCTGTTGCTGTGCCATTCAGTCACAGTGCTGGCT
CAGGGTCGGAGCTACAGGCACCTTGGTTGGTGGTACGCTTTTCACCCAGT
GTTTACTCTGTTGTTCTTTACCAGCCATAAGATACTGACAGGAATGAAAT
ATAGATGCTTTCTGGATGATGAAAACGACGGTGTTAACCTGTGGAATTAT
CAGGCCCCACAATGTCAGCTATATCTCAATTCTGTCTATAAATAAGGTTT
GCGAATTCTATATTTATCTCCTGGTACCGCCACCTTGCGCATAGTAGCTC
ATGTCCTAGATACATACTCCTGCTCTCTACCACCCTGTCAAACTCATCAA
TCTTTTAGCTCTTATATGCTAACCTTCAACCCCCGTATTTCATTTCCTTC
CTTTTTATCCCCCCCTCCCCCATTCATTCTGCCCCCCACGTTTTTACCTT
TCTTTTTGCTCTTAATATTTCCTTGTCTTTTTCCTATGTTCCTTTCCTAT
GTTTATTTCCTCCGCGCTTACCCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_g10.b1 MSMg01no092_g10.b1 CHROMAT_FILE:
MSMg01no092_g10.b1 PHD_FILE: MSMg01no092_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:15 2005
         (188 letters)



>mm_chr19_28430372_28430959
          Length = 588

 Score =  333 bits (172), Expect = 5e-96
 Identities = 184/188 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtactcttggagaaagcttgactataaccagtcctcacacctggtcttgagcccttcct 60
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 201 ggtactcttggagaaagcttgactataaccagtcctcacaactggtcttgagccctccct 260

                                                                       
Query: 61  cttgtgtctgccatcttggaccaggatgcccaaacagctctcaagctctggtgtgaatag 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 cttgtgtctgccatcttggaccaggatgcccaaacagctctcaggctctggtgtgaatag 320

                                                                       
Query: 121 tcgtggtatccccatcattctatctctgattattcaagcctaaaatggcatgctacatgc 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttggtatccccatcattctatctctgattattcaagcctaaaatggcatgctacatgc 380

                   
Query: 181 cctcagaa 188
           ||||||||
Sbjct: 381 cctcagaa 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)