BAC Information

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BAC

Clone NameMSMg01-092I03
Chromosome19 (Build37)
Map Location 32,786,282 - 32,864,464
singlet/doubletdoublet
Overlap geneAtad1, Pten
Upstream genePrkg1, 1810073H04Rik, Asah2, EG668042, Sgms1, 2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1, Papss2
Downstream geneB430203M17Rik, 6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092I03.T7 (MSMg01no092_i03.b1)MSMg01-092I03.TJ (MSMg01no092_i03.g1)
ACCAG310180AG310181
length722723
length of high quality
(start - end)
443 (43 - 485)514 (74 - 587)
definitionCHROMAT_FILE: MSMg01no092_i03.b1 PHD_FILE: MSMg01no092_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:23 2005CHROMAT_FILE: MSMg01no092_i03.g1 PHD_FILE: MSMg01no092_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,786,282 - 32,786,720)(32,863,951 - 32,864,464)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTGCCAGGCTTCGCGGAGAGGGCAGGTCATTATTAACATCAGCATGTT
CTGGGAAAGCATGGCCAGCACTGAAGAAACACCTCCGCCTTTGCACAAAG
AGGGAGGAGGAGAGGGGCCGGCACGAGCGGACCGGCTCCTTCCAGCCGCC
TTCTTACAAGCCTAGCCCTGAGGTCGCCCTGAGCGCCCCCGATCCTCCAA
TGACCAGGCCGCCTACAAGAGATGTCCTTGCGGGCGGCCGGAGTCTCCCG
CCAGCGCTGAGACCTGAGGGCTCGCGCCCGGCCGGGCGCCAAGGCGAGGC
CCCGGACGCCCTTGGAGGTTAATCCGCTGGATCCGGGGCGGCGCTCAAGT
GTGACCGACGCGCAGGCAGGTGACTACCGGGCTGGTCTCCCCAGGTGAGC
GCCAGGCCCTGGGGGACCGGGAGGGATGGGGGACGCACCTGGTCCGGCCC
CGCGGGAACCCGCTACTCACCCAGAGGCAGGACCAGAGACCATGGGAGAG
CCGTAGTCCGGCCTCGCACAGGAAAGAAACGCGGCCGGGGAGAGAACGCT
TCCGGGGGCTGGAGTCCCGCCCCCCATCGCACGGGAGATGCGCGATCCTT
GCTGAGCCGGCGGCGTGTCAGCCCAGGACTGGTGACGCCGTGCCGGGGCG
AGCTACTTTCCCTCACCTAAAT
CAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTTTTGTAATGAACAAATTATTCAGG
AAAAAACACTTAGCTGCAGAGAGCTCACAAAGATCCATTTTAAAACACGG
TCATCACAATGGCAGAAGGAGTGCTCAGAGATGAAATCAGAACAGCACAA
AGTGGTGTATAAGAAGGAACACAAAAACAGTATCAACTAAAGGTTGGAGT
GGAGCAACAGAACAAAAAGAAACTAGAATTCCATACGCTTGACTGGTGTA
TAATGCTGGAAACAGGAAAAAGGCAGGGAGCCCTAAACCTTTCACTTCTC
TATTCTCTGTCCAAAAGAAAAATGCCGAGTCAGTAGTAGGAGATATATTA
ACAATTCCTCATAAGTTAAATCTTTTCTACTTGATAATTTAAGCAAAACT
GCTTCTTGATTATTTAAGAGCTAGCAATAGAAAATATAGTAATTATATAC
AACAATAAAGCAGAGCTAGCAATCAGTTATTCTGAGCAAAATATAACCCA
TCAATTTCTTTAGTCAACATTTATCTGAATCTAAGGGCACAGAAGGGATT
TATAAAGGCTATATTATAAAGGCATAAAGAACGGACTTATAAAGATTATA
AAGCTGTGCCTACAAAACGAATCTAAGCAGTTTAACCAATTTAAAAGACA
ACTCCGTTTGACAAGAAAGTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_i03.b1 MSMg01no092_i03.b1 CHROMAT_FILE:
MSMg01no092_i03.b1 PHD_FILE: MSMg01no092_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:23 2005
         (443 letters)



>mm_chr19_32786078_32786920
          Length = 843

 Score =  833 bits (431), Expect = 0.0
 Identities = 437/439 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgccaggcttcgcggagagggcaggtcattattaacatcagcatgttctggga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgccaggcttcgcggagagggcaggtcattattaacatcagcatgttctggga 264

                                                                       
Query: 65  aagcatggccagcactgaagaaacacctccgcctttgcacaaagagggaggaggagaggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagcatggccagcactgaagaaacacctccgcctttgcacaaagagggaggaggagaggg 324

                                                                       
Query: 125 gccggcacgagcggaccggctccttccagccgccttcttacaagcctagccctgaggtcg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gccggcacgagcggaccggctccttccagccgccttcttacaagcctagccctgaggtcg 384

                                                                       
Query: 185 ccctgagcgcccccgatcctccaatgaccaggccgcctacaagagatgtccttgcgggcg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 385 ccctgagcgcccccgatcctccaatgaccaggccgcctacaagagatgtccttgcgggca 444

                                                                       
Query: 245 gccggagtctcccgccagcgctgagacctgagggctcgcgcccggccgggcgccaaggcg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gccggagtctcccgccagcgctgagacctgagggctcgcgcccggccgggcgccaaggcg 504

                                                                       
Query: 305 aggccccggacgcccttggaggttaatccgctggatccggggcggcgctcaagtgtgacc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggccccggacgcccttggaggttaatccgctggatccggggcggcgctcaagtgtgacc 564

                                                                       
Query: 365 gacgcgcaggcaggtgactaccgggctggtctccccaggtgagcgccaggccctggggga 424
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gacgcggaggcaggtgactaccgggctggtctccccaggtgagcgccaggccctggggga 624

                              
Query: 425 ccgggagggatgggggacg 443
           |||||||||||||||||||
Sbjct: 625 ccgggagggatgggggacg 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no092_i03.g1 MSMg01no092_i03.g1 CHROMAT_FILE:
MSMg01no092_i03.g1 PHD_FILE: MSMg01no092_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:23 2005
         (514 letters)



>mm_chr19_32863751_32864664
          Length = 914

 Score =  971 bits (502), Expect = 0.0
 Identities = 511/514 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttttgtaatgaacaaattattcaggaaaaaacacttagctgcagagagctcacaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 714 tcttttgtaatgaacaaattattcaggaaaaaacacttagctgcagagagctcacaaagc 655

                                                                       
Query: 61  tccattttaaaacacggtcatcacaatggcagaaggagtgctcagagatgaaatcagaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tccattttaaaacacggtcatcacaatggcagaaggagtgctcagagatgaaatcagaac 595

                                                                       
Query: 121 agcacaaagtggtgtataagaaggaacacaaaaacagtatcaactaaaggttggagtgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 agcacaaagtggtgtataagaaggaacacaaaaacagtatcaactaaaggttggagtgga 535

                                                                       
Query: 181 gcaacagaacaaaaagaaactagaattccatacgcttgactggtgtataatgctggaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gcaacagaacaaaaagaaactagaattccatacgcttgactggtgtataatgctggaaac 475

                                                                       
Query: 241 aggaaaaaggcagggagccctaaacctttcacttctctattctctgtccaaaagaaaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aggaaaaaggcagggagccctaaacctttcacttctctattctctgtccaaaagaaaaat 415

                                                                       
Query: 301 gccgagtcagtagtaggagatatattaacaattcctcataagttaaatcttttctacttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gccgagtcagtagtaggagatatattaacaattcctcataagttaaatcttttctacttg 355

                                                                       
Query: 361 ataatttaagcaaaactgcttcttgattatttaagagctagcaatagaaaatatagtaat 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ataatttaagcaaagctgcttcttgattatttaagagctagcaatagaaaatatagtaat 295

                                                                       
Query: 421 tatatacaacaataaagcagagctagcaatcagttattctgagcaaaatataacccatca 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 294 tatatacaacaataaagcagagttagcaatcagttattctgagcaaaatataacccatca 235

                                             
Query: 481 atttctttagtcaacatttatctgaatctaaggg 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 atttctttagtcaacatttatctgaatctaaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)