Query= MSMg01no092_p04.b1 MSMg01no092_p04.b1 CHROMAT_FILE:
MSMg01no092_p04.b1 PHD_FILE: MSMg01no092_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:58 2005
(491 letters)
>mm_chr19_57802883_57803772
Length = 890
Score = 890 bits (460), Expect = 0.0
Identities = 482/490 (98%), Gaps = 5/490 (1%)
Strand = Plus / Minus
Query: 4 ggaattcactaatc-taaactgcattttagaaacctaaagcctctagcatcatgcttaat 62
|||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 535 ggaattcactaaacataaactgcattttagaaacctaaaccctctagcatcatgcttaat 476
Query: 63 agtgggagactacatgttttcttctcctaaaatcaagaagtctttgctctctcttcattt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 agtgggagactacatgttttcttctcctaaaatcaagaagtctttgctctctcttcattt 416
Query: 123 atgtcatttatttccatcttgtatgggacattcgaatcaaggcaaacaaaaaataaacag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 atgtcatttatttccatcttgtatgggacattcgaatcaaggcaaacaaaaaataaacag 356
Query: 183 taaaatac-aaaaaaaaaggataaagcagaggctggttatgagtgcattattttttctac 241
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 taaaatacaaaaaaaaaagcataaagcagaggctggttatgagtgcattattttttctac 296
Query: 242 tcaaggaaatattcttctaaaaggtaaaaatctgataagcaaagataaatgtgaaagatc 301
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tcaa-gaaatattcttctaaaaggtaaaaatctgataagcaaagataaatgtgaaagatc 237
Query: 302 acagtacagaagtcttgcacagactctagcagcagagtttggtagtatggtatttgccta 361
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 acagtacagaagtcttg--cagactctagcagcagagtttggtagtatggtatttgccta 179
Query: 362 gcatgtgtgaggtcttgaagttgatccctatagccacaagaacaaataataaaccttaaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gcatgtgtgaggtcttgaagttgatccctatagccacaagaacaaataataaaccttaaa 119
Query: 422 taacttcagggtggctagtgaggcttggctagccaacccaaaggtctgccatatttctgt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 taacttcagggtggctagtgaggcttggctagccaacccaaaggtctgccatatttctgt 59
Query: 482 aactagcaat 491
||||||||||
Sbjct: 58 aactagcaat 49
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 890
Length adjustment: 10
Effective length of query: 481
Effective length of database: 880
Effective search space: 423280
Effective search space used: 423280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no092_p04.g1 MSMg01no092_p04.g1 CHROMAT_FILE:
MSMg01no092_p04.g1 PHD_FILE: MSMg01no092_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:59 2005
(451 letters)
>mm_chr19_57650484_57651334
Length = 851
Score = 833 bits (431), Expect = 0.0
Identities = 446/451 (98%)
Strand = Plus / Plus
Query: 1 actgggttgggtgaaatagactgatctgtccatttccgtgctcacttccagcaaggaagt 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgggttgggtgaaatacactgatctgtccatttccgtgctcacttccagcaaggaagt 260
Query: 61 cactaccagccaaggaaccgaaaggtactgtctatgcaattaaaagaacaggttggcttt 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactatcagccaaggaaccgaaaggtactgtctatgcaattaaaagaacaggttggcttt 320
Query: 121 gctcaatacagaaacaaagaaaccatgcaagagacacagtgtttctttaattaggagact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctcaatacagaaacaaagaaaccatgcaagagacacagtgtttctttaattaggagact 380
Query: 181 gagattctattgaagacactttatgattattattattttttctttatggtggcagctatc 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 gagattctattgaagacactttatgattattatttttttttctttatggtggcagctatc 440
Query: 241 cttgactcaagtgggaagtgctggcctctggcttttgcacctatgcagagaagtggtttt 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgactcaagtgggaagtgttggcctctggcttttgcacctatgcagagaagtggtttt 500
Query: 301 gctataaacgctcaaatggtgccggttcggaactcaaggttccagcttgctcctaacatt 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 gctataaacgctcaaatggtgccggttcggaactcagggttccagcttgctcctaacatt 560
Query: 361 ctggatggtttttaatccaggaactacctgtttcaaggcattaaatgttgttccagaccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggatggtttttaatccaggaactacctgtttcaaggcattaaatgttgttccagaccc 620
Query: 421 taaaactggtaactgtcctttcatttgagac 451
|||||||||||||||||||||||||||||||
Sbjct: 621 taaaactggtaactgtcctttcatttgagac 651
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space: 370881
Effective search space used: 370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
