BAC Information

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BAC

Clone NameMSMg01-092P09
Chromosome19 (Build37)
Map Location 9,166,681 - 9,167,081
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1
Downstream geneAsrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092P09.T7 (MSMg01no092_p09.b1)MSMg01-092P09.TJ (MSMg01no092_p09.g1)
ACCAG310523AG310524
length695713
length of high quality
(start - end)
408 (76 - 483)245 (72 - 316)
definitionCHROMAT_FILE: MSMg01no092_p09.b1 PHD_FILE: MSMg01no092_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:00 2005CHROMAT_FILE: MSMg01no092_p09.g1 PHD_FILE: MSMg01no092_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAGTAGTTACCTAGCCTTAGCTCAGTACAGCTACGACACA
GTTGCATGAAGATGTGGTGCAGTTTCAAGTTTAAAATGTTAAAGTGCACA
GTCTCTACCTAGGATGAGAGCCAACCCAATGCAATCTCCTTCAAAAAGTT
TATGGCCAACTTACCTTACTGTGAGGACTGTGCATTTCTTTTTTGCTTGT
TTAATTTTTTCTGACTTTTTACTTATCTTTATTGTATGTGCATCCACTAC
ATGGCCTATATGTAGAGATCAGGAGACGTCTTTGTGGAGTTGGTACTCCC
CCTCTGTCTTTACATGGTTCCAGGGATGTTTAAATGAACTCAGGTTGCCA
GGCGTATACAGCAAGTTATCCTTGTTTGCTGAACCTTTTGCTTACCTGAC
TGCTGCTCATCTGTTTTTTTTTTTTTAAAGACCGGTTCTCAGGCAATCCA
AGTTGGCCTGCAACTTGCTACATAACTGAGGTTGGACTTGGACTCCCCCA
TTTAATGTTATGCCCTGGGCTATCACATGTGTGCGTGTGTGTGCGTGTGT
GTGCGCGTTTGCTTTTCCTGTCCCTTTATCCCTTTCTTCTTCCCTCCTAA
CCTCTCTCACCTTCTCCCTCTTTCCTCCCTCGCTCCCCTCCCCTG
TGCATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTGTTTAGCTCTGTGCCCCATTTTTAAA
TAGGGTTATTTGGTTCTCTGGTATCCCATCCCGTGGGATTCAGTTATTCG
TGGGTGCGAGGGGGACTGCAAACCTGGAAGGAGATGGGAGGAAGGAAAAG
AGAAATAGGAGACCAGGAAGGGTACCTATTGAGGTCTCGTTTATTATGCT
GAGGTGCCTTCTTTTTAAAGCATACGTTGCGGGAAATATGGGAGGAGTCG
AGGGAGAATTATACAAAGAACAAAGAAGTGGGCATCTGCTGACATGGGGG
CCGAAGTCAGGCGCCAGGTAGCGGGCACTTTGCATCTTATCTCCAGAACA
TCCACCCTCCTTGACAACCTTGGGTGTCAGGCTGGGCTCAGGCGCGACTC
ATGTCCCTTGGATGTCATGCGAACTCTTGAAGAGATAGGGAAGAGGGGAC
TATATTTCTGCCTTTTACAGCCTCAGGTGCCATGAATGGAATACTCAGCA
AGGTTGTGATACCATGTTCTTATTTCTAGGCCCTTAAGCCTGTTAGGCAC
GATGTGTAGGCCTCCCCTTTCTCCCGTTAAGTTCTCTGACATTCCGGAGT
CCTACCTCCTTGAGTTCTCTGTAAATTTCGGATTCTCGCCCTCTGCGCTA
TGTTCTTCTGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_p09.b1 MSMg01no092_p09.b1 CHROMAT_FILE:
MSMg01no092_p09.b1 PHD_FILE: MSMg01no092_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:00 2005
         (408 letters)



>mm_chr19_9166481_9167288
          Length = 808

 Score =  768 bits (397), Expect = 0.0
 Identities = 400/401 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttagctcagtacagctacgacacagttgcatgaagatgtggtgcagtttcaagtttaaa 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttagctcagtacagctatgacacagttgcatgaagatgtggtgcagtttcaagtttaaa 260

                                                                       
Query: 61  atgttaaagtgcacagtctctacctaggatgagagccaacccaatgcaatctccttcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgttaaagtgcacagtctctacctaggatgagagccaacccaatgcaatctccttcaaa 320

                                                                       
Query: 121 aagtttatggccaacttaccttactgtgaggactgtgcatttcttttttgcttgtttaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtttatggccaacttaccttactgtgaggactgtgcatttcttttttgcttgtttaat 380

                                                                       
Query: 181 tttttctgactttttacttatctttattgtatgtgcatccactacatggcctatatgtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttctgactttttacttatctttattgtatgtgcatccactacatggcctatatgtag 440

                                                                       
Query: 241 agatcaggagacgtctttgtggagttggtactccccctctgtctttacatggttccaggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatcaggagacgtctttgtggagttggtactccccctctgtctttacatggttccaggg 500

                                                                       
Query: 301 atgtttaaatgaactcaggttgccaggcgtatacagcaagttatccttgtttgctgaacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtttaaatgaactcaggttgccaggcgtatacagcaagttatccttgtttgctgaacc 560

                                                    
Query: 361 ttttgcttacctgactgctgctcatctgttttttttttttt 401
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttgcttacctgactgctgctcatctgttttttttttttt 601


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)