BAC Information

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BAC

Clone NameMSMg01-094D16
Chromosome19 (Build37)
Map Location 13,559,377 - 13,559,766
singlet/doubletsinglet
Overlap genenone
Upstream geneDtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475
Downstream geneGA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505, EG667433, Tle4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094D16.T7 (MSMg01no094_d16.b1)MSMg01-094D16.TJ (MSMg01no094_d16.g1)
ACCAG311455AG311456
length669690
length of high quality
(start - end)
243 (62 - 304)390 (105 - 494)
definitionCHROMAT_FILE: MSMg01no094_d16.b1 PHD_FILE: MSMg01no094_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:47 2005CHROMAT_FILE: MSMg01no094_d16.g1 PHD_FILE: MSMg01no094_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:47 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TGGGCCGCTATACGACTCACTTTCGTATGCGATCCGCGGAATTCTTCATT
CCCAAAAAGCTACTAAGAGCTGGCTTCCTGAGCTCATCTAGTGACGAGTA
TTTTTAGCCACCTCCGCTAATTGATCTTTTTTCTTTTCTTTTTTCTTTTC
CTTCCTTCTAATCTCTCCCCAGGTATTCTTACCTGACCTAAACTTTTCCT
TGGGTTCAAGACTCTTGGAAAGGCCTGTATACTTAGTTTGTGTACCATAT
TTTCTCTTTGCTCCTACTCTCTCTCCCCGCTTTACTTCTGATAGATTGTC
CTGTAACTCATCTAGAATTTTTAGCCCTATCTTAATCACTTGTTTTTTTG
TGTCCCCCCACCCCCGGGCTCCTAACACTAGAAAAAGTTCAAGGCCAAAC
ATACCTAGAAAAGATATTTTCCACTTTACTTCTGATAGACTGTCTTGACT
TTCCTTAGAAAGTTCAAGACCAGACTTACCTTGTAAAGCTATTCCCCACT
TTACTTCTGATAGACTGTCTTGAATTTCGTTAGAAAGTTCCAAGACCAGA
CTTACCTTGTAAAGCTATACTTACGGGTACCCTTTTCCTCAGCTGAAGAG
TTTTGAATTCCCGCATTTGAAACCCTTCTCCACAGTCTTTTTTTTTTTTT
CACTTTATAACCGCATCTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTACACTTATTTGGAATTGGTAACAGAACTGTTAAATAAGTGAGAAA
GCCATTAAGGAAAAAGAAGAATGAAAATTCAGACTATCACTAAAGAGTGG
ATTGTTTATGGGAACATCTAGGACTTAGAATTTTAGGAATCCCATAGCTA
CTATAAGGTCATAAAAGGTATGACTCTATGTCGTGAAATAGTAGTGACTA
ATATGATGTGTCTTCTGATTGCTCTACTTCCTGTATTGTATTTGAAAAAA
AGAACAAATAAATTGTAATTATTTATTATCCAAAACATTTAGTAGCTCAT
ATTTAATTACTGGAATTCAAAAATTGAAATCGGGAAAAGATAGACAAAAG
TAAGATAGAAAAACTTCTGTCTGAGATTTCTATTTTCAATGGACAGGCGA
ATTCAGTACAGATATACATACCTGGTTCAGTTGCTGAATATAAGAGACCA
ATTGTTCATGTCTAAATGGAACATCTATATTAATCCTACCACCACTACTT
TGGCTTAGGAAGCATTGGTGAAGAGGATATCTATAAATATAAGAGCTAGA
GGATGGAAATTAAAGCTGCTAAATAATAGCTTCTAGACGTTACATGATTA
CTGCCATCTTTACCTCAGCAGCTATACCTGTCTTGTCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_d16.g1 MSMg01no094_d16.g1 CHROMAT_FILE:
MSMg01no094_d16.g1 PHD_FILE: MSMg01no094_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:47 2005
         (390 letters)



>mm_chr19_13559177_13559966
          Length = 790

 Score =  739 bits (382), Expect = 0.0
 Identities = 388/390 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaggaaaaagaagaatgaaaattcagactatcactaaagagtggattgtttatgggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaggaaaaagaagaatgaaaattcagactatcactaaagagtggattgtttatgggaa 260

                                                                       
Query: 61  catctaggacttagaattttaggaatcccatagctactataaggtcataaaaggtatgac 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catctaggacttagatttttaggaatcccatagctactataaggtcataaaaggtatgac 320

                                                                       
Query: 121 tctatgtcgtgaaatagtagtgactaatatgatgtgtcttctgattgctctacttcctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctatgtcgtgaaatagtagtgactaatatgatgtgtcttctgattgctctacttcctgt 380

                                                                       
Query: 181 attgtatttgaaaaaaagaacaaataaattgtaattatttattatccaaaacatttagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgtatttgaaaaaaagaacaaataaattgtaattatttattatccaaaacatttagta 440

                                                                       
Query: 241 gctcatatttaattactggaattcaaaaattgaaatcgggaaaagatagacaaaagtaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctcatatttaattactggaattcaaaaattgaaatcgggaaaagatagacaaaagtaag 500

                                                                       
Query: 301 atagaaaaacttctgtctgagatttctattttcaatggacaggcgaattcagtacagata 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 atagaaaaacttctgtctgagatttctattttcaatggacaggtgaattcagtacagata 560

                                         
Query: 361 tacatacctggttcagttgctgaatataag 390
           ||||||||||||||||||||||||||||||
Sbjct: 561 tacatacctggttcagttgctgaatataag 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)