Query= MSMg01no094_f12.b1 MSMg01no094_f12.b1 CHROMAT_FILE:
MSMg01no094_f12.b1 PHD_FILE: MSMg01no094_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:57 2005
(234 letters)
>mm_chr19_28603388_28604021
Length = 634
Score = 445 bits (230), Expect = e-129
Identities = 233/234 (99%)
Strand = Plus / Minus
Query: 1 aaggaacgggctcgactgtgatcctcccagccattgccatctctatagtaggctatgata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aaggaacgggctcgactgtgatcctcccagccattgccatctctatagtaggctatgata 375
Query: 61 caaggcgtgtggactgtgttgataattgactgtagaccggccacagagtgattcgtgcgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 caaggcgtgtggactgtgttgataattgactgtagaccggccacagagtgattcgtgcgg 315
Query: 121 aagcatgccgtgccggcgagagctggggtgcaggaggtagaaagaagcactttgaccatg 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aagcatgccgtgccggcaagagctggggtgcaggaggtagaaagaagcactttgaccatg 255
Query: 181 gagtaggtgtttccgagagagccgtgaggctttctggtggaaagaaattgcact 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gagtaggtgtttccgagagagccgtgaggctttctggtggaaagaaattgcact 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space: 140625
Effective search space used: 140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no094_f12.g1 MSMg01no094_f12.g1 CHROMAT_FILE:
MSMg01no094_f12.g1 PHD_FILE: MSMg01no094_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:57 2005
(435 letters)
>mm_chr19_28499704_28500536
Length = 833
Score = 775 bits (401), Expect = 0.0
Identities = 426/435 (97%), Gaps = 2/435 (0%)
Strand = Plus / Plus
Query: 1 aagaccaggagtttacaggaaaccttactactccgtgtgacagtctatacacactatact 60
||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct: 201 aagaccaggagtttacaggaaaccttactactccgtgtgacagtcaatagaaactatact 260
Query: 61 gcagaatgcagctcagggactgcatgaaactcttacagagaactgagtaaaataacgcta 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 gcagaatgcagctcagggactgcatgaaactcttacagagaaccgagtaaaataacgcta 320
Query: 121 ggcaagagggagacgtgattagtatgcaaacatttgagaggttcatctaaggcagatttt 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcaagagggagacttgattagtatgcaaacatttgagaggttcatctaaggcagatttt 380
Query: 181 agggaaaaatagtgacatgatgtttgtgtcaacaaataataaattattaagaattaagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggaaaaatagtgacatgatgtttgtgtcaacaaataataaattattaagaattaagaa 440
Query: 241 aaaacttcaaattatcattaaaccataagagcaaaaataagaaaaagaaaatacaatttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaacttcaaattatcattaaaccataagagcaaaaataagaaaaagaaaatacaatttt 500
Query: 301 aaaaagcacacagagatgaagttccaaactggttacgttattataataataaatttggct 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 aaaaagcacacagagatgaagttccaaactggttacgttattgtaataataaatttggct 560
Query: 361 agtttctgacagtgactagcaaaggaaaaaaaaataaggagagtctcaatatttatgtga 420
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 agtttctgacagtgactagcaaaggaaaaaaaaa--aggagagtctcaatatttatgtga 618
Query: 421 gcgcattataaactg 435
| |||||||||||||
Sbjct: 619 gtgcattataaactg 633
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 833
Length adjustment: 9
Effective length of query: 426
Effective length of database: 824
Effective search space: 351024
Effective search space used: 351024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
