BAC Information

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BAC

Clone NameMSMg01-094H14
Chromosome19 (Build37)
Map Location 19,192,862 - 19,193,102
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6, Rorb
Downstream geneLOC100042218
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094H14.T7 (MSMg01no094_h14.b1)MSMg01-094H14.TJ (MSMg01no094_h14.g1)
ACCAG311634AG311635
length1,734761
length of high quality
(start - end)
---240 (133 - 372)
definitionCHROMAT_FILE: MSMg01no094_h14.b1 PHD_FILE: MSMg01no094_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:08 2005CHROMAT_FILE: MSMg01no094_h14.g1 PHD_FILE: MSMg01no094_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTTTNNNNNTTTTTTNNNNNNNNNTTTTTTNNNNNTTNNNNTTNNNTTNN
TTCCTNCCNNNCCTNCNNNNNNTNNTTTCCTTTCTTCCTTCGGTNNCTTC
CGTCCTTATCCGCGACCTGCCTTCACCCCCGGCGCGCGCACGCGCGCCCG
NGCGACNCGCTCCCGCGNCCTCCGNCCGCGCGACGCCCGCGCACGTCGAC
GCCGACTCCGCGACGCACGCGCTATGAGNCACTANGAAGCCGCCAGGGGC
GATTCAGGCAGACAGAGAGAGAGTCATCGATACTCTCTGNGTNTATTGAT
GATCGATACAGTATGATCCATTCGCTTATAACACTGAATATTATACATAT
ATCATATCTCNCTGACTTTTCTGCTCTATCAATACAATCGCACGCTAGCG
CTACGTAGTCGCGAGATGAGACCAGCGTAGCGACTGTAGAGNGTGCCGAT
GTGTATCGTATGTACGGTATGGACGAGCTGCGTTCAGCGTGCACGTCGCG
CAGCAGACATACTAGAACGATCGAGAGCGACGGCCAGAGCACATCGATAA
CGCCACGCGATCGCGACGACGCAGACTGGTACCAGAGACATAATGTGAGC
TCANATCCGCGAAGTACACATGTACGACGACGCGTCTAGATAGCGTGTAT
AGCCGTGAAAGAGCGTAGACTACGTGACGGGTAGTGATGCGCAGCGTAGA
TGTAGCGCGCGGANCGATGCGGCGCGCAGAGTGCGCGCGTAGTAGCGTAC
TTCGAGCGTGTACATAGTATGTAGCGTGATCCGATNGTATCGGCCAGTNA
GATCTATCGACACGTGAGTGCGCACGCGCATAGCATGTGCNATGACACTG
CATGCNCACACGATCTGGATTGATAAATATNATNGCAATATCNACATGTC
GTATGTCGCTGACACATGCAGTGCACTAGATATCACATCGTNGACGCGAC
AACGAGTCATTANGTACGGACGATCGAAGCGCGACGCGCGTGCAGACGCG
NTGATGCTATACGACGCGCGTGTCGACGCGTGCATGATAGGTTACGACGT
CACTGNTAATAGTATCTGACACGACGTCAGTCAGCCATGAAGTNTGACTA
GTCAGGAGNAGAAGCGCGTCTAGNACGGCATGNCGNTACTAGCGACAGTG
TACGCAGTGAACACCTATGACGCGTGTCGTACGTAATCATCGTCGTGCAT
AGCGTTATCCAGCTCGCAGAGTCNTGATATGCGCGCGCCTCGCTNCTATC
TAGTTCGTGTCAGCGACNATTATTTATAATCTAGTTGATCGTCGTCGCCA
GGCACGCTCTGTATGAAACCGCTCTGCTGCGTGTGGCTGATACGTGTCTA
TCATTAACGGAAAGAACNATACCGTACACGTAGNANGCGAGAGCACAGCA
CGAAGTANAGCGGCGNACAAAACAGACGGAATAGGACTAGTCGGTTANTC
AGACACGAGATCGCATATACGAGCACGTNTTCTCAGANCGATATAGTGCG
CTGTGCTGTGNCGCGCGAGCACGCTACGTGCAGCATACGGNGTAGGTGAT
GATGNTACTCGCAGCCGTGGCGGNCTGCGAGGATCATNAGTATCAGCTGC
TGTGCTGCGTGCCATGATAGAGTACGGACCTGATGTGGGACGCACGACGC
ACGANCGAGCAGACTAGTGACGTAGNGCCGNCGN
TTTTTTTTTTTTTTTTTTTTTTTTTTCTTTNTTCCNTCTTTCCCCCCCCC
TTTTTTCCTACGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACACATCAGATGGAGTT
GGATGTTAGCTGAGAAGAAACACTTGCTACCCGATATTAGTTTTAATAAA
TCACAGACCCAAGATTATTTTTTCCCCTAGAGACGTGTATTGGACCTTCT
GTTGCTTCCTAATCCTGTGAGAAAAACAATTTAAGGAAGGAGAATTTTAT
CTTGGTTCGGGATTTCAGAGGGTTCTGTATACTAGGACAGGAGGGTGTTG
AAAACAGAAGGAGCTCATGCAGCGGGCAGCCCAAAATCACAGAGAATGGA
ATGCTGTTGTAATGGGCTCTCTGTTTGTTTCCTTTCCCATCATCTAGGCC
TCTAGCCTATGGAATGATTCTGTCCACACCCAGGACAGCTCGTCCCCAGT
CCCTTAATCATCCCTGGATATGTTCTCACAGACATGTAGAGAGATGCATG
CTACTAATCTCTTTTGAGGTTTCCCAATCCATTATATTGCGATTTCACGA
TTAACCGTCCCGTGGTGTTACTAAGTGATCTGTACCATTTTACCCCCTTA
GCCCATCACCTTACCCGATTAATACCCCTTTTTACCCCCCGATTTCAATT
ACGTAAAGTGCGTACGATGACAACCACTTTTTTTTGTCGCAACCCCCCTC
CTTTGAACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_h14.g1 MSMg01no094_h14.g1 CHROMAT_FILE:
MSMg01no094_h14.g1 PHD_FILE: MSMg01no094_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:08 2005
         (240 letters)



>mm_chr19_19192662_19193302
          Length = 641

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%), Gaps = 1/241 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacacatcagatggagttggatgttagctgagaag-aaacacttgctacccgatattagt 59
           ||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||
Sbjct: 441 cacacatcagatggagttggatgttagctgagaagtaaacacttgctagctgatattagt 382

                                                                       
Query: 60  tttaataaatcacagacccaagattattttttcccctagagacgtgtattggaccttctg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaataaatcacagacccaagattattttttcccctagagacgtgtattggaccttctg 322

                                                                       
Query: 120 ttgcttcctaatcctgtgagaaaaacaatttaaggaaggagaattttatcttggttcggg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcttcctaatcctgtgagaaaaacaatttaaggaaggagaattttatcttggttcggg 262

                                                                       
Query: 180 atttcagagggttctgtatactaggacaggagggtgttgaaaacagaaggagctcatgca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttcagagggttctgtatactaggacaggagggtgttgaaaacagaaggagctcatgca 202

            
Query: 240 g 240
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 641
Length adjustment: 9
Effective length of query: 231
Effective length of database: 632
Effective search space:   145992
Effective search space used:   145992
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)