BAC Information

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BAC

Clone NameMSMg01-094M07
Chromosome19 (Build37)
Map Location 5,670,832 - 5,671,055
singlet/doubletsinglet
Overlap genePcnxl3
Upstream geneGm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1
Downstream geneMap3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094M07.T7 (MSMg01no094_m07.b1)MSMg01-094M07.TJ (MSMg01no094_m07.g1)
ACCAG311847AG311848
length774675
length of high quality
(start - end)		234 (208 - 441)240 (59 - 298)
definitionCHROMAT_FILE: MSMg01no094_m07.b1 PHD_FILE: MSMg01no094_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:33 2005CHROMAT_FILE: MSMg01no094_m07.g1 PHD_FILE: MSMg01no094_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNNNNNNNNNN
NNNNNCCCCNNNNCCCCCTCTTCCNNNNACATCTATXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCATCCTCCTGC
CTCCACCTAATAAGTGCTTCAATTATAGAAGCCAGCTTCTGTGCAGGGTC
ACCCTAGATTTTTCTAGGTGTATGACAGTCTGTCCAGATCAGGTGAGGTG
CCCGGCACAGACCCACCACCTTCAGGATACAGTCCTGCTTGCTCCCATGG
TTACCCACCATGGCTACTGTTAGCAAGGATACAGTCCTGCTTGCTCCCAT
GGTTACCCACCATGGCTACTGTTAGCAAGGATACAGTCCTGCTTGCTCCC
ATGGTTACCCACCATGGCTACTGTTAGCAAGCACCAGCATTGTTAAGCTG
GGAAAGGCTGGTAGGTTTTATTTTGCTACTGAGTTGAATCTAGGGTCTCA
GACATGCTATGCAGGTTTGCTACCACACTCCTAGCCCTGGACTGGTGGTC
CCTGGGACATACCTTACCCAACTGCCCCAGTTGTATCCAGTACCCCTGGA
GGGTATCCCTAACGTGATTGCCTTCTCCTCTCTAAACCTCAGGGATTTGA
AAGAGTTTATTCTAGGTAGCATAACTAAGGAGTTTCCGACTTCAGGTACC
TGCTCAAAATGTCCCGGTATTCTGTTAGTATGTTATTCATTGTCTTATAT
GTTTAAATGTGTATTTCTTATCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCAGCCTGGGCTAAAGAGTTGTGAGCCAGGCATATCTCACAGT
GCGGTGTGGAAGCTGGAATGTCAGGCTTTCGAGGTCATTCTTAACTACTA
GAGTGAGTTTGAGGCTAGCCTGTACTACATGAAACCCTGTCATAAACAAA
ACTTGTGATAGAGTCAGGTGACCGTAAACCTTGACTGTGACCTGTTTCTA
ACCTGGGCTCCTTGTTTCTCCAACCTGCAAAGCACTTTATGGGGCCAGAG
ACTTGGTGCTAATGACTGTTTGGAGCCCAGCAAGGACTGCCCTGGGTTCA
AAGTCCCCCGAAGGCTTATAGCTGAGCTCTCTAAGGCTGGTGGTCATGGT
CATGGTATCCCGGACCTCAGGATGGGCGTGTCTGTTTTTCTTGGGCCTGA
CAAGCTCAGCTCGTTTGCACAGGATGTCCCCTTGCTCACTCATGTGACAT
GCAATGCCTGACAGTCTGGCTGTCTTGTACTGTACTCCGCTGTGTCCCAT
ACCCTGTTTTCCTTCTTAGACAGCCCTTGTTTCTTCCGCCAGCACATGGT
CTTATCTGCCATTCTATTTTTCGCCGCCTTGTCCCACTGCTTTGTGCCCT
ATACCGTTTCCTCTTTTCCCCCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_m07.b1 MSMg01no094_m07.b1 CHROMAT_FILE:
MSMg01no094_m07.b1 PHD_FILE: MSMg01no094_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:33 2005
         (234 letters)



>mm_chr19_5670684_5671317
          Length = 634

 Score =  418 bits (216), Expect = e-121
 Identities = 222/224 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttttctaggtgtatgacagtctgtccagatcaggtgaggtgcccggcacagacccacc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 149 atttttctaggtgtatgacagtctgtccagatcaggtgaggtgcccagcacagacccacc 208

                                                                       
Query: 61  accttcaggatacagtcctgcttgctcccatggttacccaccatggctactgttagcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 accttcaggatacagtcctgcttgctcccatggttacccaccatggctactgttagcaag 268

                                                                       
Query: 121 gatacagtcctgcttgctcccatggttacccaccatggctactgttagcaaggatacagt 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gatacagttctgcttgctcccatggttacccaccatggctactgttagcaaggatacagt 328

                                                       
Query: 181 cctgcttgctcccatggttacccaccatggctactgttagcaag 224
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cctgcttgctcccatggttacccaccatggctactgttagcaag 372



 Score =  205 bits (106), Expect = 2e-57
 Identities = 106/106 (100%)
 Strand = Plus / Plus

                                                                       
Query: 67  aggatacagtcctgcttgctcccatggttacccaccatggctactgttagcaaggataca 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aggatacagtcctgcttgctcccatggttacccaccatggctactgttagcaaggataca 378

                                                         
Query: 127 gtcctgcttgctcccatggttacccaccatggctactgttagcaag 172
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtcctgcttgctcccatggttacccaccatggctactgttagcaag 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 4
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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