Query= MSMg01no094_o10.b1 MSMg01no094_o10.b1 CHROMAT_FILE:
MSMg01no094_o10.b1 PHD_FILE: MSMg01no094_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:44 2005
(486 letters)
>mm_chr19_3635357_3636242
Length = 886
Score = 849 bits (439), Expect = 0.0
Identities = 466/475 (98%), Gaps = 2/475 (0%)
Strand = Plus / Plus
Query: 13 gaattcc-accacagacgcagacagccagacagactgcaacactcatataaaagcctgga 71
||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 213 gaattccaaccacagacgcagacagccagacagactgcagcactcatataaaag-ctaga 271
Query: 72 aggaaagaagctcgccgggttgatctgaggttctttaacaagggtggcaaaggttttcca 131
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aggaaagaagctcgaagggttgatctgaggttctttaacaagggtggcaaaggttttcca 331
Query: 132 tgagggaccgggggaccgggaagagccaaacacctcagggaaagaatccagtcacagcac 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgagggaccgggggaccgggaagagccaaacacctcagggaaagaatccagtcacagcac 391
Query: 192 tgaaacaagagggctcacagacagcctgctctccagccaagcaaaggtctggaaccccgg 251
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tgaagcaagagggctcacagacagcctgctctccagccaagcaaaggtctggaaccccgg 451
Query: 252 ggacccaatgggtggtgattcccacctacatgggaaggtgttcaatcatgtctcctggac 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ggacccaatgggtggtgattcccacctacatgggaaggtgttcaatcatgtctcctggac 511
Query: 312 ccctgactcctgcctaagttactgcccccacagccccctcaggagaggtgtgtgactatc 371
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ccctgactcctgccgaagttactgcccccacagccccctcaggagaggtgtgtgactatc 571
Query: 372 agtcatgcacataaagccccaagctcctggcattctggctagactccacctccacagtta 431
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 agtcatgcagataaagccccaagctcctggcattctggctagactccacctccacagtta 631
Query: 432 cctgacaacagcaaggtagcccaggtcactataaaaggggctgcttggaagccgg 486
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 cctgacaacagcaaggtagcccaggtcactataaaaggggctgcttggaagccgg 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no094_o10.g1 MSMg01no094_o10.g1 CHROMAT_FILE:
MSMg01no094_o10.g1 PHD_FILE: MSMg01no094_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:44 2005
(545 letters)
>mm_chr19_3772314_3773257
Length = 944
Score = 973 bits (503), Expect = 0.0
Identities = 537/553 (97%), Gaps = 10/553 (1%)
Strand = Plus / Minus
Query: 1 aattactcgaactttctggctttaacaatacaatatgggggctggtgagatggctcagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 aattactcgaactttctggctttaacaatacaatatgggggctggtgagatggctcagtg 737
Query: 61 ggtaagagcacccgactactct--------tccgaagttcaaatcccagcaaccacatgg 112
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 736 ggtaagagcacctgactactcttccgaaggtccgaagttcaaatcccagcaaccacatgg 677
Query: 113 tggctcacaaccacccgtaatgagatttgatgccctcttctggtgcgtctgaagacagtt 172
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 676 tggctcacaaccacccgtaatgagatctgatgccctcttctggtgcgtctgaagacagtt 617
Query: 173 acagtgtacttacatataataaataaatctaaaaaaaattattaaaaaaaaaacaataca 232
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 616 acagtgtacttacatataataaataaatctaaaaaaaattatt-aaaaaaaaacaataca 558
Query: 233 atatgggaaatcgctctcaaaaatttttttaaaaagaaaaaaaatcactagaaattaaca 292
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 557 atatgggaaatcgctctcaaaaaattttttaaaaag-aaaaaaatcactagaaattaaca 499
Query: 293 caaacttataaaaataggctagagtgattattgtatagactgagtctctataataaaacc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 caaacttataaaaataggctagagtgattattgtatagactgagtctctataataaaacc 439
Query: 353 ctacaatgcagactggagaaatggctcagtggttgatagcactggcagctcttccagagg 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ctacaatgcagactggagaaatggctcagtggttgatagcactggcagctcttccagagg 379
Query: 413 tcctgagttcaaatcccagcaaatacatggtggctcacagccatctgtaatgggatcccg 472
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 378 tcctgagttcaaatcccagcaactacatggtggctcacagccatctgtaatgggatcccg 319
Query: 473 tgccctcttctggtgtgcctgaagacagcgacaatgttctctataaataaaataaatctt 532
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgccctcttctggtgtgtctgaagacagcgacaatgttctctataaataaaataaatctt 259
Query: 533 tataaaaaaataa 545
|| ||||||||||
Sbjct: 258 taaaaaaaaataa 246
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 944
Length adjustment: 10
Effective length of query: 535
Effective length of database: 934
Effective search space: 499690
Effective search space used: 499690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
