Query= MSMg01no094_o15.b1 MSMg01no094_o15.b1 CHROMAT_FILE:
MSMg01no094_o15.b1 PHD_FILE: MSMg01no094_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:45 2005
(312 letters)
>mm_chr19_20518278_20518990
Length = 713
Score = 513 bits (265), Expect = e-150
Identities = 298/309 (96%), Gaps = 1/309 (0%)
Strand = Plus / Minus
Query: 5 gaattcacccccttccttgatgtcaa-actgacaaaataaatgaatatgtaagatccctg 63
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 513 gaattcaccccctttcttgatgtcaacactgacaaaataaatgaatatgtaagatccctg 454
Query: 64 tccattttgggtacctgtgatataatatgtgatatggtgctcttttgttctggagtctaa 123
||||||||| ||| |||||||||||||| |||||||||||| || |||||||||| ||||
Sbjct: 453 tccattttgagtagctgtgatataatatatgatatggtgctattctgttctggagactaa 394
Query: 124 aaagtgcagtatctagggatcaacatactcagcaaggggctccttcatgtcaacctgtga 183
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aaagtgcagtatctagggaccaacatactcagcaaggggctccttcatgtcaacctgtga 334
Query: 184 aaaagaaaaattacccatctggcaagcctttttgtaatgtttttaatgggttaaacctgc 243
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aaaagaaaaattacccttctggcaagcctttttgtaatgtttttaatgggttaaacctgc 274
Query: 244 ccacgaattctttaatggcctgattgccttacctctccatactgttatattgccaactaa 303
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ccacaaattctttaatggcctgattgccttacctctccatactgttatattgccaactaa 214
Query: 304 atctcagct 312
|||||||||
Sbjct: 213 atctcagct 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 713
Length adjustment: 9
Effective length of query: 303
Effective length of database: 704
Effective search space: 213312
Effective search space used: 213312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no094_o15.g1 MSMg01no094_o15.g1 CHROMAT_FILE:
MSMg01no094_o15.g1 PHD_FILE: MSMg01no094_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:45 2005
(643 letters)
>mm_chr19_20466696_20467738
Length = 1043
Score = 845 bits (437), Expect = 0.0
Identities = 575/669 (85%), Gaps = 85/669 (12%)
Strand = Plus / Plus
Query: 1 tgagccaatcaagagactctgtctcaaaaaaaaaaaaaaaaaaaaaggtaggtcacactt 60
||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 234 tgagccaatcaagagactctgtctc-----------aaaaaaaaaaggtaggtcacactt 282
Query: 61 anagctttacctctcaccattataaatatgt-------at--------acaccacaaact 105
| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 283 a-agctttacctctcaccattataaatatgtacacacaataaacacacacaccacaaact 341
Query: 106 cacacacacacacacatacacacgtacacacatacagtcacacatataccc-ccccacac 164
|||||||||| ||||| ||||| ||||||||||||||||||| ||| |||| |||| |||
Sbjct: 342 cacacacacaaacacacacacatgtacacacatacagtcacatatacacccaccccccac 401
Query: 165 acacacatgtacacacatacagacacacatacacatacacatacacacacacacacacac 224
|||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 402 acacacatgtacacacatacagac------------acacatacacacacacacacacac 449
Query: 225 acacacacacacacacacacacacacacacacacatatcaatcaatcagtagaccaaaaa 284
|| ||||||||||||||||||||||||
Sbjct: 450 ac----------------------------------atcaatcaatcagtagaccaaaaa 475
Query: 285 tgatagctcactagaaatggggagtctgaaacagcaggattcccatgacttcaaggtcag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tgatagctcactagaaatggggagtctgaaacagcaggattcccatgacttcaaggtcag 535
Query: 345 cctaggttacacagtggctactttaaaaaagag----agaaaaagaaaaag-aaaagaaa 399
|||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct: 536 cctaggttacacagtggctactttaaaaaa-agaaaaagaaaaagaaaaagaaaaagaaa 594
Query: 400 aagaaaaag-aaaaagaaaaagaaaaag---aagaaaaagaaaaggaagccaaagaaaaa 455
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 595 aagaaaaagaaaaaagaaaaagaaaaagataaagaaaaagaaaaggaagccaaagaaaaa 654
Query: 456 g-aaaaaaaatagaaatgaaaaagaatagtagaaagtcaatggagatactagcttaagtt 514
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 655 gaaaaaaaaatagaaatgaaaaaaaatagtagaaagtcaatggagatactagcttaagtt 714
Query: 515 tagcaatatttatgacacatactgaaaactcaatgccaatttcaaggaagtcaatgtgac 574
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 715 tagcaatatttatgaaacatactgaaaactcaatgccaatttcaaggaagccaatgtgac 774
Query: 575 tttaaatactatagtcatttaatgtaaatgcttaagaaaaaacaaattgatatttttgat 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tttaaatactatagtcatttaatgtaaatgcttaagaaaaaacaaattgatatttttgat 834
Query: 635 acatgctgc 643
|||||||||
Sbjct: 835 acatgctgc 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 144
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
