BAC Information

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BAC

Clone NameMSMg01-095C01
Chromosome19 (Build37)
Map Location 30,480,459 - 30,481,057
singlet/doubletsinglet
Overlap genenone
Upstream genePdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6, Il33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088
Downstream geneLOC668020, EG546723, Dkk1, Prkg1, LOC625995, Cstf2t, 8430431K14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095C01.T7 (MSMg01no095_c01.b1)MSMg01-095C01.TJ (MSMg01no095_c01.g1)
ACCAG312116AG312117
length696703
length of high quality
(start - end)
603 (35 - 637)543 (74 - 616)
definitionCHROMAT_FILE: MSMg01no095_c01.b1 PHD_FILE: MSMg01no095_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:03 2005CHROMAT_FILE: MSMg01no095_c01.g1 PHD_FILE: MSMg01no095_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAACAT
GCCACACCAACTCTTCCTTGTTCTATAGATTAAGCTAGATAGAATTATTC
TTTGTCTAGTATTGCTGAAAAATTAATGAAAACAATAGTTTAGCATTGCT
GAAAAATTAATGAAAACAATAGTACTGAAGTGGTCTGTGCTATTCGCTGT
TTAATCATTTATTATGCTTTTCACTATTCATCATTTAAACTATTCAGTTT
AAATAAATTGTAAAATCATTAACCCTTGAAGAAGCTCCAGCCTATTGCTG
CTGCCTTTTGTTACCCCCCTCCAAAGGGAAAGGCTAAGTCTCAGTTGCTG
AAGATACCATGCATTTCAGAAACCAGGCTCACCCAGAGGACCTTGATCTG
GAACTGCCATGACAGCTGTGTCATCAGCTCCTGATTCAAGTGTGTATCAT
ACTCCCCAGCTTTTCAAGAAATCACTCCTTTTACACATTCCACCCATGCT
ATCACCTGGCCCTGTTTTCACGAGGAAGGGGACAAGTGAAAGAATGTGTA
AAATATTAAAAAGGCACAGATATGGTTGCTTCAAAACTTGTGGAACTAAA
TAAAACATATTTAAAAAGAGCTGGTGAGACCGTGGTGAATGAATCACTTC
AAGGTTTTGAATAATGCGGTATTTAGTCCATAATAATGAACTATTA
AATGAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACTTGGCACCTGCTAGTTCTAATGC
ATGAAGGAAACAGATCTAGTAGTGCCCATACTGTGGCAGGAAGGACTGCT
TAGCAGCTTGATCGCTGTCCTTCTCTGATTGACAGCTTGGTCAGTAAATG
CCTGATATTAGTTCATTTGACATTAGACCTTAGAAAACAATTAACTAAGG
CATTTTTGCACGATGAAAGCATTGTATGTAATCAGAATATGATTGTTCTT
GAGTGTACAGACAGAATTATACCTGGACAGTTTTAAACTTAAAGATTCTG
CGGAGTCTGCTTTAAAGGGACTACGATAATGCACACTGTGGCAGATGGAC
ACGGTTCCTCTAATATGATAGAGATTATGTGGGTTTTTCCCCTGAAATGA
AGCCTAGTTCCTGTGTGTCTTAGTTTAGTGATGGTTCCCTTTGTAGTTGT
TTATTTGTATCGTTAAGTTTTTGGTAGCACCAAATGAATCTGTTATATGA
AAGACTTTTAAAATAATTTCTGTATATTATATATATGAAATGGCTTTTAT
TGAACAGCTATCTTCCACTTTATATTTCTGGAACTATCATGATGTCTAAA
TAAAAAAGTAGGAAGAGTCAAAAACAAAAATAATTTGCCCCACACCACAC
GAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_c01.b1 MSMg01no095_c01.b1 CHROMAT_FILE:
MSMg01no095_c01.b1 PHD_FILE: MSMg01no095_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:03 2005
         (603 letters)



>mm_chr19_30480255_30481257
          Length = 1003

 Score = 1021 bits (528), Expect = 0.0
 Identities = 582/600 (97%), Gaps = 2/600 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaacatgccacaccaactcttccttgttctatagattaagctagatagaattat 64
           ||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 gaattcaaacatgccaca-gaactcttccttgttctatagatttagctagatagaattat 263

                                                                       
Query: 65  tctttgtctagtattgctgaaaaattaatgaaaacaatagtttagcattgctgaaaaatt 124
           ||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 264 tctttgtttactattgctgaaaaattaatgaaaacaatagtttagtattgctgaaaaatt 323

                                                                       
Query: 125 aatgaaaacaatagtactgaagtggtctgtgctattcgctgtttaatcatttattatgct 184
           ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 324 aatgaaaacaatagtactgaagtggtctgtgctattcactgtttagtcatttattatgct 383

                                                                       
Query: 185 tttcactattcatcatttaaactattcagtttaaataaattgtaaaatcattaacccttg 244
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 384 tttcactattcatcatttaaactattcagtttaaataaattgtgaaatcattaacccttg 443

                                                                       
Query: 245 aagaagctccagcctattgctgctgccttttgttacccccctccaaagggaaaggctaag 304
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 444 aagaagctccagcctattgctgctgccttttgttacccccctcaaaagggaaaggctaag 503

                                                                       
Query: 305 tctcagttgctgaagata-ccatgcatttcagaaaccaggctcacccagaggaccttgat 363
           |||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 504 tctcagttgctgaagataaccatgcatttcagaaacaaggctcacccagaggaacttgat 563

                                                                       
Query: 364 ctggaactgccatgacagctgtgtcatcagctcctgattcaagtgtgtatcatactcccc 423
           |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 564 ctggaactgccatgacagctgtgtcatcagctcctgatccgagtgtgtatcatactcccc 623

                                                                       
Query: 424 agcttttcaagaaatcactccttttacacattccacccatgctatcacctggccctgttt 483
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 624 agcttttcaagaaatcactccttttacacattccacccatgttatcacctggccctgttt 683

                                                                       
Query: 484 tcacgaggaaggggacaagtgaaagaatgtgtaaaatattaaaaaggcacagatatggtt 543
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 684 tcacgaggaaggggacaagtgaaaaaatgtgtaaaatattaaaaaggcacagatatggtt 743

                                                                       
Query: 544 gcttcaaaacttgtggaactaaataaaacatatttaaaaagagctggtgagaccgtggtg 603
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gcttcaaaacttgtggaactagataaaacatatttaaaaagagctggtgagaccgtggtg 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)