BAC Information

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BAC

Clone NameMSMg01-096D19
Chromosome19 (Build37)
Map Location 50,387,246 - 50,387,350
singlet/doubletsinglet
Overlap geneSorcs1
Upstream geneLOC629448, Siah1-ps1, EG433251
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096D19.T7 (MSMg01no096_d19.b1)MSMg01-096D19.TJ (MSMg01no096_d19.g1)
ACCAG312961AG312962
length755747
length of high quality
(start - end)
383 (52 - 434)45 (262 - 306)
definitionCHROMAT_FILE: MSMg01no096_d19.b1 PHD_FILE: MSMg01no096_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:31 2005CHROMAT_FILE: MSMg01no096_d19.g1 PHD_FILE: MSMg01no096_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGGAGAAATAGTAGTGTCTAAAGAGATAACAGGACTCTAAT
TGGCAAAACCACATTGCTTCCAAAGGGGTGAGTAAGGAATCAAAGTTTAT
GATTTTCCATAAACCCCTAATATATCATTAATATCATTAATATTAGTGAA
CTTCAGGTTCTTTGTAAGTAGTATTGCTTTGGTATGTTTACATGAACCTT
GGATACAGACTATACAAATGTTGGACTTAGTAGCCCAACAGGAAGAAAAG
AGTCCCAAGAATCCCTGTGTCTGCTGCTTTAGACTCTACAAGCTCATGCA
CATCTTGCTTAGATGATTTAGAAGGTCTTGTTCTCCTGATGTCCTCCATC
CTTCTGGCTCTTAAACTCTTTGTGCCTTCTCTTCTGTGGGGTTAACTGAG
CTCTGAGGGGAGGGATTTGATGGAGAGATGTCCCACTTACACTATTTCTT
TCTGTGCCCCGCCTGACCGTTACTGTCTGCCGCTGTTCAATACCCTGCTA
GAAGACCCCTCCCTGATGATGACTGAACCACGCCCTGACCTACGTAGCAT
ACCTCCACTTGCTTATCGAGTCCTTCTGGATTTTGGGGGTCGCGCCGCGA
CCACCCTCCCATCCTCCCCGCTCCACCTTGCCGCTCCCCTCCCCCCCCCC
TTCCCCCCCTACCCCTCCCCTCCCCCCTTTCCCCGCCCCCTCCCTTTCCC
TCCCC
CCCATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGTCAGAGGATCTCAA
AGAGGTAGCAGGAACGGCTTCTGTAGATGAACTTGTCCTCAGAGATTACA
GAGGCAGTTATATTATTCACCTCTTCTTCACTATGACAAAATACTTAAGG
GTGTGTGGAGACAGCTAAAAGGATGAAGCGTGTCTTTCATCTTCCCCTTG
GAGTGATGCCCATCCATGGTCAGCAGCTGTATTGCTTTTAAGACTGTGTC
AGGCAAAAGCCTCCTGGCCAGAAGGTCTTGGCTGACGCAAGCTGCCTGCC
TCACAACTGCGTGAAAAGGATAGTTTCTGGGCCAAGATAACTTCTCAGCC
ACACTGCCTACCAGCTATCTTCTCCTATAAGTATAATTACACATTCCGCC
ATAGTCCTGATTCAACTTTTGTCCCACCAATAAAGCGATCTTCACCTGAT
GTTAGCTGCCCGCGCCTGACCCTTCGATCCTGGGTATCTTTTACACGCCC
TAATCATAGGCCCCCCTTTTCTATCTGCTCCCTTTGCCTCCCTTATTTGG
ATCCTTCGCCTTTCTAAGCGCCCCCTTCCTACTTTTATTTGACACGCCCA
TTCTCCTCCCTCTGTCCCTAAGATTACTCATTCCATCTACCCCCCATTCT
TACCACCCCTTCGTACGCCCCTTTCCCCGTTCCTTCATTTCTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_d19.b1 MSMg01no096_d19.b1 CHROMAT_FILE:
MSMg01no096_d19.b1 PHD_FILE: MSMg01no096_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:31 2005
         (383 letters)



>mm_chr19_50386945_50387724
          Length = 780

 Score =  186 bits (96), Expect = 2e-51
 Identities = 104/108 (96%), Gaps = 3/108 (2%)
 Strand = Plus / Minus

                                                                       
Query: 102 ttttccataaacccctaatatatcattaatatcattaatattagtgaacttcaggttctt 161
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 406 ttttccataaacccctaatatatcattaatatcattaatattagcgaacttcaggttctt 347

                                                           
Query: 162 tgtaagtagtattgctttggtatgtttacatgaaccttggatacagac 209
           ||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 346 tgtaagta---ttgctttggtatgtttacatgaaccttggatacagac 302


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 780
Length adjustment: 9
Effective length of query: 374
Effective length of database: 771
Effective search space:   288354
Effective search space used:   288354
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)