BAC Information

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BAC

Clone NameMSMg01-096N02
Chromosome19 (Build37)
Map Location 16,213,742 - 16,213,932
singlet/doubletsinglet
Overlap geneGnaq
Upstream geneEG635497, Pomc-ps1, LOC667482, Psat1, LOC100041424, Cep78, LOC100042048
Downstream geneE030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a, Foxb2, A230083H22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096N02.T7 (MSMg01no096_n02.b1)MSMg01-096N02.TJ (MSMg01no096_n02.g1)
ACCAG313403AG313404
length751786
length of high quality
(start - end)
190 (170 - 359)156 (138 - 293)
definitionCHROMAT_FILE: MSMg01no096_n02.b1 PHD_FILE: MSMg01no096_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:19 2005CHROMAT_FILE: MSMg01no096_n02.g1 PHD_FILE: MSMg01no096_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTNCCCCCNNNCCNCCCCAACCN
NNGGATCAAAATTGCGGCGCTAAACGACTCACTATTTCCAAGGACCGCGG
AATTCCAGAAGGTTCCTACAGCGCCCTATAACATGTTTGGCCTTTTCTTT
TGTATGAAGAAGACCAAAAAAAAACAGCCAGCAAGGCGACACAGACAACA
ACCAAGAAAAAACAAGCTGGACACTTGCTCTGTCCTTCCTGTTGGCACAT
AACTAAACAGCGATTCACGTAGCACATAACTGCACACAGAAGTGCTTAAT
ATTTCATTATGTGGACAACTAGGAGGAAATTCTGGAGGAAAAGTTATTTT
CCAGTAATTGGTAAGCATTTGTTTAGTCAGCGGCTTTGAGAGATCTTCAT
AATTTAATTTATGGACAATACTAATTTTGTTCTTAATACTGAACTATAAA
GAGGCTTAAGGTGTAGCTCACTATGGACTAGCACACTTGGGTCCTTAGGT
TCAATCCCCTGCACAAAAAAAGGAAAAAATAAAGGCTTTTAACATAAACT
CAGCGCTGCCTCCAGAAATGACACCTATGAAGGCTGACCACAGGCCTAAC
TAATATGGCAAATTCTGCTCGCCAGCTCACAGTTCGCTTTTCCGCACAAT
GAACATTCACAACTACTTTATACTCTAATTCCTCCCGTCAGTATGTGTAC
TCCCTTGCTGCCTTATTGCCACCCCTATACCAACAACATCGCCTTCACGA
C
NTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTCTCTCCGNGCCGCCC
TCCACCATCTNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCCACTCAAGG
TTACACAGTGAGATACTGTCTCAATGCGCCAAAAACCAAAGTAATGACAA
GACTCGCAGAAATGCGTTACCTTATAGTTATTGAGGTGAGGAATCCAAGG
TCAAGGTGCCGCCAATGCTGGCTCCTTCTAGCAGTTCTGAATAGCCTTCT
GTACACTTCTTTCCTAGTTTGGGTTGGGGCTGGAAATCTCTGGGATTCTT
TGGCCTGTAGGACCAATCTACTTATATTGTCCTGTTATATTCTTCTCCAC
AGTGTCCCAAATTACCCTCATCGTATAAGGTCACTAACTATTAGATCTCA
GCTCACTCTAAACACACCTGTCTGCTGATACCGCTGTGTTCCTCCATTTC
TAACATGATCATCCCAATCTCTCGCAATACCTTAATTCTGGAGCCACGGC
TTATGCTATAACATTTCCGCCTTCCCGTAGCAACCTCTATGTTTATTGTA
ACTCGTACCTGTTAACTTACCCTCCTAATCTGATCGGCGATCCCGACTAC
CCTCACCATATACTCTGCCCGCCATTTCCTTCTGCGGTCTCCTCCTTCCT
GCCGCCCTTTATTAATCCTTCTAATCGCTCCATATTTCTCTAATTCTCTT
GACCCCTCCCTACCATCCTCTTCCCCGCTTTTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_n02.b1 MSMg01no096_n02.b1 CHROMAT_FILE:
MSMg01no096_n02.b1 PHD_FILE: MSMg01no096_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:19 2005
         (190 letters)



>mm_chr19_16213542_16214132
          Length = 591

 Score =  323 bits (167), Expect = 4e-93
 Identities = 185/191 (96%), Gaps = 1/191 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaa-cagccagcaaggcgacacagacaacaaccaagaaaaaacaagctggacacttgc 59
           ||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 391 aaaaaccagccagcaaggcaacacagacaacaaccaagaaaaaacaagctggagacttgc 332

                                                                       
Query: 60  tctgtccttcctgttggcacataactaaacagcgattcacgtagcacataactgcacaca 119
           |||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||
Sbjct: 331 tctgtccttcctgttggcacataactaagcagtgtttcacgtagcacataactgcacaca 272

                                                                       
Query: 120 gaagtgcttaatatttcattatgtggacaactaggaggaaattctggaggaaaagttatt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gaagtgcttaatatttcattatgtggacaactaggaggaaattctggaggaaaagttatt 212

                      
Query: 180 ttccagtaatt 190
           |||||||||||
Sbjct: 211 ttccagtaatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 591
Length adjustment: 8
Effective length of query: 182
Effective length of database: 583
Effective search space:   106106
Effective search space used:   106106
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)