BAC Information

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BAC

Clone NameMSMg01-097J16
Chromosome19 (Build37)
Map Location 11,534,613 - 11,534,910
singlet/doubletsinglet
Overlap geneMs4a4b
Upstream geneGm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221
Downstream geneMs4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097J16.T7 (MSMg01no097_j16.b1)MSMg01-097J16.TJ (MSMg01no097_j16.g1)
ACCAG313992AG313993
length702694
length of high quality
(start - end)
298 (65 - 362)206 (51 - 256)
definitionCHROMAT_FILE: MSMg01no097_j16.b1 PHD_FILE: MSMg01no097_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:24 2005CHROMAT_FILE: MSMg01no097_j16.g1 PHD_FILE: MSMg01no097_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:24 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTTG
CCTTGCACTGAAGCCTAGAATTGGCAGGTTTGAATGATCTCAGTGATCAG
ATATGGTCCCTCTCCTGTGAATTAATCCATTAATCAGGAGCTTGGCACAT
GAGAGACACTGATTCAGTGGATTGTGAGAATATTTGCATTGGTTGTTTTC
ATCCTGGCTCCTGCTTTAACAGATCCCTTAGCCTCTGGGTTCAGGCCTTG
TGGCAGGCACAAGGGGAGAACAGAAAGTAGGAGAGATAGCAATTTCACAT
GAGATATAATTATTTTTGCATAAACAAGTAAATGCTTAGGCTTGGTGACT
CATGACTATAATCCCACCATTGAGAAGAGAGGGTGGATTTTTAACCCAAG
TGTAACCTTGGCTCCATAGTAAGACTCCAATCTCTAGCAATATCAATCAC
ACATACTGAAAACATCATCAAAGCAAAACAAAGCAAAGGTAGATTTTTCA
ACATAAGTAGCAGATATATATGTGTGTTTATAGTGCATTTTTATAAGCTG
TAAGAACTATCATATTTCTTGATCATTTTGGCTGATCACTGGCAATTCCT
TGTGGCTCGTTCTGGTCATTCTAAGTAGAATACACTATCTGCTTCTACTT
ACAAATAGTTTACACCTTCCAACCCCTTTTTGCAATATCATAAGCTATCC
CG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAA
ATTCTGACTCTTTCTAGAAGTTGCCCTCTCAATATCTCTCCCTCTCCCCT
ATCCCTCTCTGTCTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGT
CTGTCTGTCTGTCTCTCTCTCTCTCTCACACACACACACACACACACACA
CACACACACACACACACACGCAACTGTTTTTTAAAATGGTTCCAGAAAGG
GGCTGGAGAAGTGGATCAACAGTTAATAGTGATTGCTGCAGTGATTGCGT
AATACCCAAGTCAGATCTCCCAAGGCTGGCATCAGATTAGACCTCAGCCC
TCCAAGCATCATGATCTCAACCCAATGAGGTCGCAAAGCTAGGAACCCAT
CTGGCATGTTTAGAGTATGGAGTCACAGTGACCATGCGAGGATTAATATG
CTAAACCTCTCTGGTTTTGATTATTTGTTATGTACCAATAATGAAACACG
TGGACCACATAGTAAAAGGCCCTGTTCTTGACCTCCTTTTGCTCTTCTGA
GTGTGTTGTACAAATGTCTACCACTTCCTCAAACAAGGACAGACTCATAT
CAATCTTCTCAAATGCTCCCACTGTGAACTCTGTCTCACAACTGACATTA
AGGAGAAGTCTCCTGTTGTTAGAACAAAAAAGAAAACTCTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_j16.b1 MSMg01no097_j16.b1 CHROMAT_FILE:
MSMg01no097_j16.b1 PHD_FILE: MSMg01no097_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:24 2005
         (298 letters)



>mm_chr19_11534413_11535110
          Length = 698

 Score =  495 bits (256), Expect = e-144
 Identities = 288/300 (96%), Gaps = 4/300 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagaattggcaggtttgaatgatctcagtgatcagatatggtccctctcctgtgaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctagaattggcaggtttgaatgatctcagtgatcagatatggtccctctcctgtgaatta 439

                                                                       
Query: 61  atccattaatcaggagcttggcacatgagagacactgattcagtggattgtgagaatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atccattaatcaggagcttggcacatgagagacactgattcagtggattgtgagaatatt 379

                                                                       
Query: 121 tgcattggttgttttcatcctggctcctgctttaacagatcccttagcctctgggttcag 180
           |||||||||||||||||||||||||||||||| || | |||||||||||||||| |||||
Sbjct: 378 tgcattggttgttttcatcctggctcctgcttcaaaaaatcccttagcctctggattcag 319

                                                                       
Query: 181 gccttgtggcaggcacaaggggagaacagaaagtaggagagatagcaatttcacatgaga 240
           ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gccttgtggcaggcacaagtgcagaacagaaagtaggagagatagcaatttcacatgaga 259

                                                                       
Query: 241 tataattatt--tttgcataaacaagtaaatgcttaggcttggtgactcatgactataat 298
           ||||||  ||  ||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 258 tataat--ttaatttacataaacaagtaaattcttaggcttggtgactcatgactataat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)