BAC Information

Click to search

BAC

Clone NameMSMg01-097P04
Chromosome19 (Build37)
Map Location 60,440,317 - 60,440,583
singlet/doubletsinglet
Overlap genenone
Upstream geneEmx2os, Emx2, Rab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik
Downstream genePrlhr, 2700078E11Rik, Nanos1, Eif3s10, 1810055E12Rik, Sfxn4, Prdx3, Gprk5, LOC671322, BC029127, LOC100043112, EG547091, LOC433261, EG633057, Csf2ra, LOC100043120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097P04.T7 (MSMg01no097_p04.b1)MSMg01-097P04.TJ (MSMg01no097_p04.g1)
ACCAG314252AG314253
length774796
length of high quality
(start - end)
267 (130 - 396)71 (129 - 199)
definitionCHROMAT_FILE: MSMg01no097_p04.b1 PHD_FILE: MSMg01no097_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:52 2005CHROMAT_FILE: MSMg01no097_p04.g1 PHD_FILE: MSMg01no097_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCTATAATATCTTTTGAATCCTTTCCTCTTCTTCTTCCCCCCCATCCTA
TTTTGAGTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGAT
GCGCGGAATTCAGCCCATATGTCCCTCTGCCCTCATCATTACACTCTGAT
CACAGACCCTGCCGGTTACCTGGGATCAACCCAGAACATGAAAGGTAGGG
AACAGACCCAGATTTCTAGACAGCCTGTCACAGAAAATTCCCATTCTTAG
GGGCCTGGGGGTTGGGGGAGGATTTGGACTAATGTCAAGTAAATCATTCC
CCCCACCTCCTGGTCAAACACATTTCCACGCTTCCTGCTTCCCGAAGGGA
GCATTATCCAGCCTGCTCCTTCTAGAGCACTCCTGTTCTGCAATGGGGGC
GCAGGGGGCAGGTTCTTTTGGCTGGATGGCTGTGTGTCTAATTTCCATGA
TTACACCAAACTCTCTGCTGAAAGCAGCCTTTGCAAAATGACTGAAAGAT
CAGGTGCCTTTCTCGTGCCTTCTCATCAGCTCCACCTCCCTCTGCACGAT
CCTAGTTGCCATGAAGGTAACTGAGGAATGTATCACACACCTCCAAAAGC
TCATCCTTCCTCCAACGATGTCAACCCCCACATCCCGTCTTATATACGCC
CGCATTATGCCCCGTGCCACCTGCAGAATGGCTCTTCTCTCCTCCCTCCT
CTTCTCTGGCCCCCCCACTCCTGTCCTTATTCCCCCCCCCAAATTCCCCC
CCTTATTACATGCCAACACCCCCC
AAAATAGACGGAATATATGTGGCACTGTGGTCGCTTTTTCNCNCCGGGCN
NTNTCTATGAAGTGCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCCCGCAACTCCTTCTTTATGTCCTCTACCATTAT
CATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGT
GTCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGCGAGTGG
TCCTGGTTTCTGTTATTAGGATTCTTACGTTTACCTTTCGCCATCCGGCA
ATCTCTGGAGTTAGTCGTTATAGTTGTCTTTGTTAAGAGACCGTTCCTCT
GTTGATTTTGCTACCCTCTATCATCTTGTCTGCGAGACAAGCTCTCTTCT
CTGAGCCCCCGCGTTCACATTAGCCTCTGTAGGTAGGCTCTCCTCTCTCA
GAAAAAGGCGGAAAGGTACCCAGCTTTTGAACCTCCTTCCGTATGACGCT
GTAGCCCCCAAACCAGATTTTTCCCTAAAGTCTGCCGAGCTTTCGCTCCA
CAATTTAATACTTCCGTGTAGTACGGTTATAACAACGGCCCGCTCCCCCC
TCTTCCCAAGGTTTGTTCCACCAAATTGGCGGGGGGCGTGGTCTCCTTTA
TACTCACCCCCCCCTGGTGATGATCCGGAGGACCCTACCACGGGACCCGA
CATTCCGGTGCTTCCACTCGCCACCAAGCGAGCGCCGCACCCAAGCTCCT
CGCCCTTTTTTTAATTACCGGGTAGAGCCGGAATAGGGGGGCCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_p04.b1 MSMg01no097_p04.b1 CHROMAT_FILE:
MSMg01no097_p04.b1 PHD_FILE: MSMg01no097_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:52 2005
         (267 letters)



>mm_chr19_60440117_60440783
          Length = 667

 Score =  509 bits (263), Expect = e-149
 Identities = 266/267 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccctcatcattacactctgatcacagaccctgccggttacctgggatcaacccagaacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccctcatcattacactctgatcacagaccctgccggttacctgggatcaacccagaacat 260

                                                                       
Query: 61  gaaaggtagggaacagacccagatttctagacagcctgtcacagaaaattcccattctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaggtagggaacagacccagatttctagacagcctgtcacagaaaattcccattctta 320

                                                                       
Query: 121 ggggcctgggggttgggggaggatttggactaatgtcaagtaaatcattccccccacctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggcctgggggttgggggaggatttggactaatgtcaagtaaatcattccccccacctc 380

                                                                       
Query: 181 ctggtcaaacacatttccacgcttcctgcttcccgaagggagcattatccagcctgctcc 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 ctggtcaaacacatttccacgcttcctgcttcccgaagggagcactatccagcctgctcc 440

                                      
Query: 241 ttctagagcactcctgttctgcaatgg 267
           |||||||||||||||||||||||||||
Sbjct: 441 ttctagagcactcctgttctgcaatgg 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)