BAC Information

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BAC

Clone NameMSMg01-098G10
Chromosome19 (Build37)
Map Location 44,617,772 - 44,742,295
singlet/doubletdoublet
Overlap geneSec31b, Ndufb8, Hif1an
Upstream geneNkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b
Downstream genePax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098G10.T7 (MSMg01no098_g10.b1)MSMg01-098G10.TJ (MSMg01no098_g10.g1)
ACCAG314593AG314594
length760753
length of high quality
(start - end)
470 (106 - 575)202 (140 - 341)
definitionCHROMAT_FILE: MSMg01no098_g10.b1 PHD_FILE: MSMg01no098_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:30 2005CHROMAT_FILE: MSMg01no098_g10.g1 PHD_FILE: MSMg01no098_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,617,772 - 44,618,231)(44,742,094 - 44,742,295)
sequence
NNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCNNNCCNNNNAA
TAAATTATTNTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAA
GAGGATCCGCGGAATTCCTTTGTCTTTCAAGTCCAGAGAAGGGTCCCTGA
AATCAACCTCAAATATTTCCAGGGTGGCATTTGTGCTAAAGGAGGCATCT
AGTTGCTGAGCAGATGTTCCTAGTCACATGGAAAGGAAAGAAGAGGCAGC
AAATGAGCAACAATGTATGCATGGGAAAATACTGGGTACTAATAGGTTAG
GGAGCAGGGAAGAAACAGAACAGAAGAGAGATAGGAGCATCCTTTTCTCT
AGAGGTAACCGCAAGGAAAGCATGAGGTGCCGCCCTCAGGCCCTAGTCCA
AGGCTGTTACCAGGTACCCAACCTGACATAATCCTACAGCTGTCTCTCAT
GGTCATTAAGGAATTCTAGATACTGAGTTTTCCTTTGATGGCTGACTTCT
AGTACCTCCTGGTCTGTCGTGTCATCATACCTGTGGTCAGATGCACAGGG
TACTGCCTGGCCGGGATCCACACTTGGACAGCTGGCTTCTCAAGTTCTTT
CAACTTCATGGTTTCGGGAAACTTATATGACCTTTGGCCCTCTATAATTA
GACCTAATCACTTTATAACAATCTTAGGGCCAGTGATCCAGGGAGCCTCC
TGTGGACACATATATCGTTCTCTCTTTCTCCCCATATGAAATACCCAAGC
AAAAAACAGA
NNNNNNNNNNNNNNNNNNNCCCCNNNNNNNNNNNNNNNNNNNCCCCCCCN
NCCCCATAATTTAATTTCCGATGCTATGGGTGGCCTGGCGGCCGCCTTCA
AACAAATTTAGGTGACCTATATTCCCTCCGCGGAATTCAAAGCTAAAGAG
TTCTCCCTGGGGACTCCAGTCCTTGATGGGTGGGCCTATTGTTTCCTCTG
GCTTCTACCCAACCCCACCTCACCTGTTGCCATCACTCTGATGCATGCAA
ATGAGAGTAACCTTCGAGGATGGTTGGGTTTCTTCAGTGATGACTGGGGT
TCCGTGCTAAAGCAAATAGTGGCCACTTTGCCTAGGAGGGGATGGGTTAT
TGAGGAGGCAGAGCCTTGAGCCTTGATTCTTGAGCCTTCACCTATCACCT
ACTCAAGGCCAAATTTGTTCAAGCTGTATTCCAGGAGCAAGTCAGTTATC
CTGCTATTGAGGATGGAGTATCATCAGTGGGTACCCCTTTAGTTCTCGTG
CATCCTCGCTGTATGAGGTAATAGATTGGTACCAAACACTCCTCATCCAG
AATGACGAGGTCACAGTACTCTAGTGCCTGGCCAACTGAATTACCTATTG
TTTTGCTTACCCACACATCCTCTGGCTTATGTATGTAGTGGTTCTCCCTT
AACTGTCCATATGCAATTATTAGAGCCCACTATTGCATTGGCTTTCAATG
CTACTCCTTGTCCCCGTTTTATATCGCATCCCACAGTTTCATTGGAATAT
ACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_g10.b1 MSMg01no098_g10.b1 CHROMAT_FILE:
MSMg01no098_g10.b1 PHD_FILE: MSMg01no098_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:30 2005
         (470 letters)



>mm_chr19_44617566_44618435
          Length = 870

 Score =  820 bits (424), Expect = 0.0
 Identities = 451/460 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcctttgtctttcaagtccagagaagggtccctgaaatcaacctcaaatatttcca 66
           |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 207 gaattcctttgtgtttcaagtccagagaagggtccctgaaatcaatctcaaatatttcca 266

                                                                       
Query: 67  gggtggcatttgtgctaaaggaggcatctagttgctgagcagatgttcctagtcacatgg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gggtggcatttgtgctaaaggaggcatctagttgctgagcagatgttcctagtcacatgg 326

                                                                       
Query: 127 aaaggaaagaagaggcagcaaatgagcaacaatgtatgcatgggaaaatactgggtacta 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaaggaaagaagaggcagcaaatgagcaacaatgtatgcatgggaaaatactgggtacta 386

                                                                       
Query: 187 ataggttagggagcagggaagaaacagaacagaagagagataggagcatccttttctcta 246
           |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ataggttagggagcggggaggaaacagaacagaagagagataggagcatccttttctcta 446

                                                                       
Query: 247 gaggtaaccgcaaggaaagcatgaggtgccgccctcaggccctagtccaaggctgttacc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gaggtaaccgcaaggaaagcatgaggtgccgccctcaggccctagtccaaggctgttacc 506

                                                                       
Query: 307 aggtacccaacctgacataatcctacagctgtctctcatggtcattaaggaattctagat 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aggtacccaacctgacataatcctacagctgtctctcatggtcattaaggaattctagat 566

                                                                       
Query: 367 actgagttttcctttgatggctgacttctagtacctcctggtctgtcgtgtcatcatacc 426
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 567 actgagttttcctttgatggctgacttctagtagctcctggtctgtcgtgtcatcgtacc 626

                                                   
Query: 427 tgtggtcagatgcacagggtactgcctggccgggatccac 466
           ||||| ||||| |||||||||||||||||||||| |||||
Sbjct: 627 tgtggccagatacacagggtactgcctggccgggctccac 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no098_g10.g1 MSMg01no098_g10.g1 CHROMAT_FILE:
MSMg01no098_g10.g1 PHD_FILE: MSMg01no098_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:30 2005
         (202 letters)



>mm_chr19_44741894_44742495
          Length = 602

 Score =  383 bits (198), Expect = e-111
 Identities = 201/202 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagctaaagagttctccctggggactccagtccttgatgggtgggcctattgtttcctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aagctaaagagttctccctggggactccagtccttgatgggtgggcctattgtttcctct 343

                                                                       
Query: 61  ggcttctacccaaccccacctcacctgttgccatcactctgatgcatgcaaatgagagta 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggcttctacccaactccacctcacctgttgccatcactctgatgcatgcaaatgagagta 283

                                                                       
Query: 121 accttcgaggatggttgggtttcttcagtgatgactggggttccgtgctaaagcaaatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 accttcgaggatggttgggtttcttcagtgatgactggggttccgtgctaaagcaaatag 223

                                 
Query: 181 tggccactttgcctaggagggg 202
           ||||||||||||||||||||||
Sbjct: 222 tggccactttgcctaggagggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 602
Length adjustment: 8
Effective length of query: 194
Effective length of database: 594
Effective search space:   115236
Effective search space used:   115236
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)