BAC Information

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BAC

Clone NameMSMg01-098I22
Chromosome19 (Build37)
Map Location 43,386,566 - 43,386,798
singlet/doubletsinglet
Overlap geneLOC545291
Upstream geneCrtac1, D19Ertd386e, Loxl4, 4833409A17Rik, Hps1, EG627624
Downstream geneCnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098I22.T7 (MSMg01no098_i22.b1)MSMg01-098I22.TJ (MSMg01no098_i22.g1)
ACCAG314706AG314707
length772761
length of high quality
(start - end)
242 (191 - 432)279 (141 - 419)
definitionCHROMAT_FILE: MSMg01no098_i22.b1 PHD_FILE: MSMg01no098_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:43 2005CHROMAT_FILE: MSMg01no098_i22.g1 PHD_FILE: MSMg01no098_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNCCCCNNNNNNNNNNNNNCCCCCCCCCCCCCNNN
NNTATTTTTTNNNGTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCCGCGGAATTCCCATTCTCGGCATGCAGCAAACAAAGAAT
TAGGATGGTGGGGGAAATATGTCTTCTGATATCACCCTCTTGACCTACTT
TTTCCAACTTTTTCCCACCTCTTACGTTGTAGTATTTCTCACCAGTGCTA
CCATATAATCAGTTCATCAGAGGATTAGTTCATTAGTTCATTCAAGAGCC
CTTATGATTCTTTCTCTTCCCCAGAGTCCATCAGCTGGTCAATCAAGCCA
TGAGCACACTATCCTTTTAAAGTCTTCCAAGATTCATGCTATAACAACTT
TCAACTTATCCTGTGGTCCACTGTTTTTGTTACCCGTTTTACCGTTTACA
TTATGTCTTAAGGAATCCTGTGCCTAATTCTGCGTTTTATTGAAACACTA
TGTGGAGCTATTATTACTTCTGTAATCTTCTTTTTTGACACTGTTGTGCT
TTATTATAGCAGACCATCTTGTCTCCTCTCTCTTGGATCTTTGTGATACG
CTTCCCTGACCTCTACCTGTCCTAAGTGTTCTTGCACATATCCACCATAG
CCATTTTATATTAACCTTCTTCCTTTCCCCTCCTTTTTTGGCCCAACCTT
CTTATTATCTTTTTTCCCGCCGCCCCCTTATTAATTCAAACCCTAGTGGT
TGTCCCTAATCCGGTTTTTCAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCNNNNN
TTTTTTTTGTACNCATCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGCTTGCC
TGTGGGGTTGTTTTTGTTTTTGTTTTTGTTTTTGCTTTTCTAGGTTGAAG
CCTGGTGAGTTTCTGCCTACCCATGGCTATTGGTGATATCCTTGCTCAGG
TCATGTTTAGGCATCCGCATTGGCAAGACTTATGAGACCCAATCTCACAG
AAAACTCCCCGATCCTCTGACTCTCACAATCTTTCTGCCTTGTTCTTCAC
AATGATCCCTGAACCTCAGATGAACCTCATATTATTTATCTTGTAGATGT
GTCAGATGGGTCTGGGCTCCATAAAATATAGCCACTAACCCCAGTCTAGT
GAATTCATGACTTGCTAGGGAGCCTACAACTTCCACTTTATTAAATCGAT
TTGGTACTTTTTAATGCAGTTTCTGCCAGTAAGTCACTGTTGGTCTCTGT
AGTGAGCCTATGTTTGGTAACTCTCAGAAAGTGAACTAGTGATCAGTCTA
TAGGCTAAGAGAACAGACAGTCACTGTATCCATAGATTGGCCTAGTCGGT
CATCACTGGATATAGATGTCTATTGGATTTGTTAATTTTTTTTGTCCCAC
TTTCATGCCAATACCTTTTTTTTTTCTTTTTTATTGTCTGCTCACCTAAC
CCCTATTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_i22.b1 MSMg01no098_i22.b1 CHROMAT_FILE:
MSMg01no098_i22.b1 PHD_FILE: MSMg01no098_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:43 2005
         (242 letters)



>mm_chr19_43386280_43386920
          Length = 641

 Score =  364 bits (188), Expect = e-105
 Identities = 225/242 (92%), Gaps = 9/242 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgacctactttttccaactttttcccacctcttacgttgtagtatttctcaccagtgcta 60
           |||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||
Sbjct: 519 tgacctactttttccaacatgaccccacctcttacgttgtagtatttctcaccagtgcta 460

                                                                       
Query: 61  ccatataatcagttcatcagaggattagttcattagttcattcaagagcccttatgattc 120
           ||||||||||||||||||        ||||||||||||||||||||||||||||||||||
Sbjct: 459 ccatataatcagttcatc--------agttcattagttcattcaagagcccttatgattc 408

                                                                       
Query: 121 tttctcttccccagagtccatcagctggtcaatcaagccatgagcacactatccttttaa 180
           |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 407 tttctcttccccagagtctatcagctgg-caatcaagccatgagcacactatccttttaa 349

                                                                       
Query: 181 agtcttccaagattcatgctataacaactttcaacttatcctgtggtccactgtttttgt 240
           |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 348 agtcttccaagattcaagctataacaactttcaacttatcctgtggcccactgtctttgt 289

             
Query: 241 ta 242
           ||
Sbjct: 288 ta 287


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 641
Length adjustment: 9
Effective length of query: 233
Effective length of database: 632
Effective search space:   147256
Effective search space used:   147256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)