BAC Information

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BAC

Clone NameMSMg01-099C16
Chromosome19 (Build37)
Map Location 10,260,172 - 10,260,401
singlet/doubletsinglet
Overlap geneFads1
Upstream geneEG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227
Downstream geneFen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099C16.T7 (MSMg01no099_c16.b1)MSMg01-099C16.TJ (MSMg01no099_c16.g1)
ACCAG315166AG315167
length945759
length of high quality
(start - end)
---230 (77 - 306)
definitionCHROMAT_FILE: MSMg01no099_c16.b1 PHD_FILE: MSMg01no099_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:31 2005CHROMAT_FILE: MSMg01no099_c16.g1 PHD_FILE: MSMg01no099_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAATCGTGGAGAGCGACAATAACCCCATTAAAGGCCAACGAGCAGCCGG
TGTTATAGTGCCCGGCCTATCCGCGTGCGCCCCGTATTCCTTTCGCCGCT
TCTGTTTAACCAAAAACACACATATCAACGCCGACCAACGCAGTAATAGA
GCGCGCTATTTCACCGCACTAACGATTCCCGCCCTTTATTATTGCGACAC
TTACCCGGGGCGATTTAGGGGAGAGGTGGCGGTGGCGGGCAGCTCGTTTT
TATCGTACTCGCGTTAATTACTCACCTGACACGCGATTATTTTCTAACAG
TACAATAAGATAGGGGTGCAGAATATATCGGTTGTTCCCAGAATGATTGA
GCGAGAGTATCCGCGGCCGGTATATTATTGAGCGAATGAAGATTAATAAC
CGGAACAATACTACATTCGGTTCTACTGTTATCAGCGATCCGCGAAATAT
TCTCTCCCGGATTAGTATTACGGCCATTGATTTTGTTCCACTATTTATTA
ACGACGACACTATATTAGATAAACAGTCGGAAAAGAAGTGGAAGAAAAGG
GTCGTCCCCCGAATTATGATTCCGGGAAACAAAAAACAATCATAAAGACG
ATCACCACGTGGAATATAGCGTGACGATTATGTGTTATAAGGTAATTCGG
TTAATACGCCGATTAATGCGCGTATTTATAGCGTCTCCGCCAGTATATAT
CCGTCTAGCGCCGGCATATTTACCCTCTATTATCCCGGCCCGGTATTACA
CCGGCCGCGAGCATATTATACAGCTCGCTCTATATCGCGACTTTTATATT
TATTTATTACCCCCGCCGTTTCCGCCGTCAGCTGCCCTTATATCCCGCAA
CGCTGTTTTATTTACGTGTTGTAGAGATTAACATATGTTTCTCCATACAA
CCGAAGATCTTATATATCTGAGTCGCGCCGATCTTATATATTCGN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGAGAATAACCAGGCAAAGCCACT
CTCACCTGAACTGTACTGAGCAGTACTGCACAGAGGATGAAGGGCACCAA
GGAAGTTCCAAAGATCCAAAGGGTGAGCCAGGCAGCCACATCCAGCAGCA
TGATGTGAAGCAGGTAGACCAGGAAGAAGAGGTGGTTGGCCTTCATGAGG
CCCATTCGCTCTACTGTGGCCCGCAGCTCCCGGAATTCATCAGTTAGCGC
TTTCTGCGGGAGACGGGGGCTATTTTTTTTCTCAGTGGTTCCCCAACCCT
TGAAGAGAACCTCTCGTGTAGCCAGCTGTTGTTTAAGCCCCCCGTCTTAT
CCAAAGATTACCCTGATGCCCCCCCCCAGGCTAGTAAAAGCTCTTATCCA
CCGCCCTCTCGCCCCGGCTCCTACACCGACTTACTTTGTTTTCTCTGCTC
CCTTATTCTCTCTGTACTGTGGCTTCCCCATCGGCGCATTTCTGTTTTTA
TATTTTGTGACCCCCACCCTTGCTATCCGATCTCTCTCGCTTATAACTCT
CCCCGCTTTTGCTCCCCATTTCATCTTTTCCCCCCTCCCTTTTTTTTGTT
TCTCTCCCCCTCTATCCCTTCCCCCCTCGCCTCTCCTTTTTCCTCGTTTT
TTCTTCCCCTTTCCTCCTCTTCCCCCATACTCCTTCTTCTCTCCCCCTTT
TTATTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_c16.g1 MSMg01no099_c16.g1 CHROMAT_FILE:
MSMg01no099_c16.g1 PHD_FILE: MSMg01no099_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:31 2005
         (230 letters)



>mm_chr19_10259972_10260601
          Length = 630

 Score =  437 bits (226), Expect = e-127
 Identities = 229/230 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagaataaccaggcaaagccactctcacctgaactgtactgagcagtactgcacagagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tgagaataaccaggcaaagccactctcacctgaactgtactgagcagtactgcacagagg 371

                                                                       
Query: 61  atgaagggcaccaaggaagttccaaagatccaaagggtgagccaggcagccacatccagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 atgaagggcaccaaggaagttccaaagatccaaagggtgagccaggcagccacatccagc 311

                                                                       
Query: 121 agcatgatgtgaagcaggtagaccaggaagaagaggtggttggccttcatgaggcccatt 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 agcaggatgtgaagcaggtagaccaggaagaagaggtggttggccttcatgaggcccatt 251

                                                             
Query: 181 cgctctactgtggcccgcagctcccggaattcatcagttagcgctttctg 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 cgctctactgtggcccgcagctcccggaattcatcagttagcgctttctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)