BAC Information

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BAC

Clone NameMSMg01-099F15
Chromosome19 (Build37)
Map Location 54,116,574 - 54,116,778
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668545, LOC674277, Add3, 1700001K23Rik, Mxi1, Smndc1, Dusp5, LOC100043462, Smc3, Rbm20, LOC100042979, Pdcd4, 2310002J21Rik, Shoc2
Downstream geneAdra2a, LOC100043004
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099F15.T7 (MSMg01no099_f15.b1)MSMg01-099F15.TJ (MSMg01no099_f15.g1)
ACCAG315308AG315309
length728689
length of high quality
(start - end)
275 (74 - 348)208 (54 - 261)
definitionCHROMAT_FILE: MSMg01no099_f15.b1 PHD_FILE: MSMg01no099_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:47 2005CHROMAT_FILE: MSMg01no099_f15.g1 PHD_FILE: MSMg01no099_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAACGAATCCGCGG
AATTCTCTCCCTTTGCCAGAAGACAAGGCAGCCATGTTAGGGAGCAGGTA
CCACAGTCAGGCTGCAGCTTTAGGCGGAGCTTTTGCTCCAGATGTTGGTG
AGTCAGACGGAGACTTAGCTGCATGTCTGCTACATATGTGCCAGGGGTCT
CGTTTCAGCTGGTATGTGCTTTTGATTGGTAGCTCAGCTTCTGAGAGCTC
CCAGAGGTCCCGGTGAGTTGAGTTTGTTGGTCCTCCTGTGGCGTTCCCAT
CTCATTCAGAGCCTTCAATCCTTTTTCTACTCTTCTAGAATAGTCCCTAG
TCTCCGCCCAATGCTTGTCTGTGGCTATCTGTGTCTGTCCCATTCAGCCC
CTGAGTAGAGCCTCTCACACGATAGTTATGCTAGACTCCTGCCCGCTAGC
ATGACAGAGTATCGTTCATACTGTCAGGGACTGGTGTTTACCCATTCTTC
CTTGTATTTTGACCCATGCTCTCTTTCTGTACCCGCTATATCTTTGCCCT
TTATTTACTTGTTCCGTCCAGATAGCCCCCCCACATTTTCCCCGCATCTT
TCCCTATTTTATTATTTGACCCCCCCATCCCTTGCATCCGTTTTTCCCCC
CTCTGTTTTACTCTATCCCCTTGTTCTTTTGTTGCCTGTCCCCGCTGTTA
TTCTTATTGTCCCGTCTTACTCTATTCG
GGCGGCCGCCTGTTCACAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXATTTCATCTCACGAACATTTATAGAGATGTGTGTGTGCGCGTGTGTG
TGTGTGTGTTTAAAATGTAAGTACCAAGACCCCACTCTAATACTAGTACA
CTGGTATTCTCAAGGAGTCTGACCCAGAAATATTTTGTGACGTTGCAGGT
AGAGCCCAGGGCCTCATGAAAACTAGACATCTCTGCCTTGAGAAATGTGA
TTTGTAAGTATCCCCCTTCAGGGACGCTCAAGGATTAAAAGATGAGCCCT
GCTTTTGTGAGTGGGTAGGCCTGACCACCAATTTATTCCCGCTATTTCTG
ACACCCCCTATAGTCAAGGTGTTCTCATCTCCTTCCGCTCTATAGCTTAT
AGAGAGCATGACTCCTGCTCTCTCTCCCATAGAGCGCTGCTACCATATAT
CGATCTCGGTACTCTTTTTTATCCGTACGTGCCCTGCTGCATTACTCTTT
TTTGTATTTATAAACCGCGACAGAGGCGCTCCTTCCTTGCTTTTTTCTTC
CTCCCTTTTATTGCTCACATCTCTTTACCGCTCCTCGATTTTTTTGTGCC
CCCCCCTTTTTCCACTCCCCCTCGCTCTCTCCCTGCTTATTTCTACCCTT
TTGCCTTCGCCGTTATGTCTCCCTCTCCTTTTTTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_f15.g1 MSMg01no099_f15.g1 CHROMAT_FILE:
MSMg01no099_f15.g1 PHD_FILE: MSMg01no099_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:47 2005
         (208 letters)



>mm_chr19_54116374_54116981
          Length = 608

 Score =  366 bits (189), Expect = e-106
 Identities = 201/205 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttcatctcacgaacatttatagagatgtgtgtgtgcgcgtgtgtgtgtgtgtgtttaa 60
           |||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||
Sbjct: 201 atttcatctcacgaacatttatagaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttaa 260

                                                                       
Query: 61  aatgtaagtaccaagaccccactctaatactagtacactggtattctcaaggagtctgac 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 aatgtaagtaccaagaccccactctaatactagtaaactggtattctcaaggagtctgac 320

                                                                       
Query: 121 ccagaaatattttgtgacgttgcaggtagagcccagggcctcatgaaaactagacatctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagaaatattttgtgacgttgcaggtagagcccagggcctcatgaaaactagacatctc 380

                                    
Query: 181 tgccttgagaaatgtgatttgtaag 205
           |||||||||||||||||||||||||
Sbjct: 381 tgccttgagaaatgtgatttgtaag 405


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 608
Length adjustment: 9
Effective length of query: 199
Effective length of database: 599
Effective search space:   119201
Effective search space used:   119201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)