Query= MSMg01no099_i23.b1 MSMg01no099_i23.b1 CHROMAT_FILE:
MSMg01no099_i23.b1 PHD_FILE: MSMg01no099_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:06 2005
(606 letters)
>mm_chr19_50572936_50573942
Length = 1007
Score = 1152 bits (596), Expect = 0.0
Identities = 602/604 (99%), Gaps = 1/604 (0%)
Strand = Plus / Minus
Query: 4 ggaattccacccctttcct-aacaaatgaaacctttagcttgaagctcaatgagttaagc 62
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 ggaattccacccctttcataaacaaatgaaacctttagcttgaagctcaatgagttaagc 748
Query: 63 ttaagagaaataaattaaacctcttaggggactgagtgttaagaagagtgaagaattgat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ttaagagaaataaattaaacctcttaggggactgagtgttaagaagagtgaagaattgat 688
Query: 123 gacctattaacagttgtaattttccacattgattattggcagcacgtgacaccatgccct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gacctattaacagttgtaattttccacattgattattggcagcacgtgacaccatgccct 628
Query: 183 tacaaattgcaatctataaacagcttagagaatatgacctttggattactgtgggtctcg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tacaaattgcaatctataaacagcttagagaatatgacctttggattactgtgggtctcg 568
Query: 243 tgaaggctttagtctatcacaaacagctgctaacagtgtgttttcttgtaggttgcaggc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tgaaggctttagtctatcacaaacagctgctaacagtgtgttttcttgtaggttgcaggc 508
Query: 303 gagagcacatttaactagagcactgggtactatttggatagagctcagcaatgccatatc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gagagcacatttaactagagcactgggtactatttggatagagctcagcaatgccatatc 448
Query: 363 caggcagaagtgatagacagtgaatggtagaaatctcctcagccacagtagaagcattat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 caggcagaagtgatagacagtgaatggtagaaatctcctcagccacagtagaagcattat 388
Query: 423 aagtttgctcaccattgattttaactcactaagtacaaagaactaattacctgagcctgg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aagtttgctcaccattgattttaactcactaagtacaaagaactaattacctgagcctgg 328
Query: 483 ttgacttagcactttttttccacttttgcagagttggggattgggaattcataaatagga 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttgacttagcactttttttccacttttgcagagttggggattgggaattcataaatagga 268
Query: 543 cagagatgctctgccatattttgcttctctttctctcttcattatttcccaataagctac 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cagagatgctctgccatattttgcttctctttctctcttcattatttcccaataagctac 208
Query: 603 agcc 606
||||
Sbjct: 207 agcc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1007
Length adjustment: 10
Effective length of query: 596
Effective length of database: 997
Effective search space: 594212
Effective search space used: 594212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no099_i23.g1 MSMg01no099_i23.g1 CHROMAT_FILE:
MSMg01no099_i23.g1 PHD_FILE: MSMg01no099_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:06 2005
(490 letters)
>mm_chr19_50480639_50481528
Length = 890
Score = 818 bits (423), Expect = 0.0
Identities = 477/517 (92%), Gaps = 36/517 (6%)
Strand = Plus / Plus
Query: 1 aacagttaggattcttgttgtgataaaaatggctgtctcgtgatggctgatggaaaggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 aacagttaggattcttgttgtgataaaaatggctgtctcgtgatggctgatggaaaggaa 226
Query: 61 agcattatcattctacatagttcaaaaatcagttcaggggcctatggagatggttcaata 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 agcattatcattctacataattcaaaaatcagttcaggggcctatggagatggttcaata 286
Query: 121 gttaaggccactggctgcttttccagaggaccagggtttggttgcttacatattcatggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gttaaggccactggctgcttttccagaggaccagggtttggttgcttacatattcatggc 346
Query: 181 tgctcacaaccatctatataactccagtctcagggatctgatgctaccatccagttgcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tgctcacaaccatctatataactccagtctcagggatctgatgctaccatccagttgcta 406
Query: 241 cagtcaatgcatgcacacagtgcacagacatacacatgcaag------------------ 282
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 cagtcaatgcatgcacacagtgcacagacatacacatgcaaggcatgtacactgtgcaca 466
Query: 283 ----------------acatgtacactgtgcacagacatacacagacaatgcactcccat 326
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gacatacacagacaagacatgtacactgtgcacagacatacacagacaatgcactcccat 526
Query: 327 agtgcacagacatacacagacaacacatgtacactgtgcacagacatacacagacagaca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 agtgcacagacatacacagacaacacatgtacactgtgcacagacatacacagacagaca 586
Query: 387 acacatgtacactgtgcagacatacatggacaatgcccggacatacacaaatga-atgca 445
| |||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||
Sbjct: 587 atacatgtacactgtgcagacatacatggacaatgcccagacatacacaaat-acatgca 645
Query: 446 catagtgcataggcaaaactgtcgttcacaaaaaaaa 482
||||||||||||||||||||||| |||||||||||||
Sbjct: 646 catagtgcataggcaaaactgtctttcacaaaaaaaa 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
