BAC Information

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BAC

Clone NameMSMg01-099M23
Chromosome19 (Build37)
Map Location 10,797,939 - 10,798,185
singlet/doubletsinglet
Overlap geneCd5
Upstream gene6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c
Downstream geneCd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099M23.T7 (MSMg01no099_m23.b1)MSMg01-099M23.TJ (MSMg01no099_m23.g1)
ACCAG315660AG315661
length730733
length of high quality
(start - end)
248 (72 - 319)216 (59 - 274)
definitionCHROMAT_FILE: MSMg01no099_m23.b1 PHD_FILE: MSMg01no099_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:27 2005CHROMAT_FILE: MSMg01no099_m23.g1 PHD_FILE: MSMg01no099_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGAGGGGCGGAATTCCT
CTCTATGTTCCATGAAATCATGGCCAAAAGCCTATATTCCACAGGGTTAG
GGGCTGGAGTGGCGGAATTCCTGGGTTCTGTCCCACCAGTGAAGCACACC
AGCTCTTTCCAGTCCCCAGGCCTTAGTTTCCTCTTCTAAAAAGCCCTCCC
TCATCCTAAGCAAGAGAGTAAGAAGGCATGGCATGGCCACGCTGCCTGCT
CCTTTGCCACTGTTGTCTTGAGATAGCTGCCAAGCTCCTTTGCCACTGTT
GTCTTGAGATAGCTGCCATCTTTCACCCAGAGGCCCCAGGGACAAGACAG
AGCTTGGTCGGAGAAGTGCTACAGAGGATGTGCCGTGTTCGATATTGCCA
AGCCCCCATCCCCACCCCCTAGGCCAGGCCTGGCGCCTCACCAGCACTTC
CTTTCTGCACACTCCTAGCCCAAGGTTCAGAGCCGCCTGCCCGGTGGCAG
CAGTGCGTGTGAGGGCATCTCTGACACGCGCCAGAGGTCACAGTGGGAGG
CCCTATGTGACAGTTCCTGCATTCAGGGGGCCGGTACGTTGGCAAGACCT
GTTGTCGTCAGCATCCCCGCGGCGACCTCATCTCTTTCCACACGCTGGAT
GCCTGACTATACCTTCCTGGGTTTCCTCCTGTGCCCACGTATAACCCGCC
CTAAATGGTACCCCCCTCTCGTAAACAACC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCATCCCTGGGACCTATGTAAAGGGTGGACAGGACTGACTACCC
CATCTTTTTCTGTTTGTTAGGTTTGTTTTGGTTTTAAGACAGGGTTTCAC
TATGTAGCCCTGGATATTCTTGAACTCTGTAGACCAGGTTGGTTTTGAAT
TCAGAGAGATCTGCCTGCTTCTGCCTCTTGAATGCTGGAATTGAAGGCAA
TCGTTAGATCTTAAGCTGTCCAAATATTCAAAATAAGCTTAAGCTGGACC
ATCGGTTTTTTTCAGGTGGCTAGGCAAAAACCAGCTTTTCTCAGAAACTT
GTGGCGCTGCTTCCCATCTGCCCAAAGGAGTCTTAATCCATTGAGCCATC
TCCCCAGCTTTCCAAAACTTTTATACATACCTAAACACTTACCGTGTCCC
TAGACTTTATTTGGACTGCCACCCCTTCCTCCATTATACAAGAACAGAAC
TTAGTTACCTTACCCCCCCCAGGATGTAAGCTACACTGCAGCTTCATCTT
CCTAACCCTTGTTTCCCCAAGATTACACCCAACGGCCTCCTGTGTTTTTT
GCCGTCCGCGTAAGCACTCTCTCCTCCCGACTTATTTCCCTATCTTCACC
CCTGTTTTTTTTATCCTCCCCTTTACTTAGTTGCCTTTCTTCTTGGTCCC
CCCTCATGCGTATATTTTGACGCCTTTCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_m23.b1 MSMg01no099_m23.b1 CHROMAT_FILE:
MSMg01no099_m23.b1 PHD_FILE: MSMg01no099_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:27 2005
         (248 letters)



>mm_chr19_10797739_10798386
          Length = 648

 Score =  431 bits (223), Expect = e-125
 Identities = 241/247 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggccaaaagcctatattccacagggttaggggctggagtggcggaattcctgggttctgt 60
           ||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 447 ggccaaaagcctataatccacagggttaggggctggggcggcggaattcctgggttctgt 388

                                                                       
Query: 61  cccaccagtgaagcacaccagctctttccagtccccaggccttagtttcctcttctaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cccaccagtgaagcacaccagctctttccagtccccaggccttagtttcctcttctaaaa 328

                                                                       
Query: 121 agccctccctcatcctaagcaagagagtaagaaggcatggcatggccacgctgcctgctc 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 327 agccctccctcatcctaagcaagagagtaaaaaggcatggcatggccacgctgcctgctc 268

                                                                       
Query: 181 ctttgccactgttgtcttgagatagctgccaagctcctttgccactgttgtcttgagata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 267 ctttgccactgttgtcttgagatagctgccaagctcctttgccactgttttcttgaaata 208

                  
Query: 241 gctgcca 247
           |||||||
Sbjct: 207 gctgcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)