BAC Information

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BAC

Clone NameMSMg01-099O13
Chromosome19 (Build37)
Map Location 59,814,031 - 59,814,511
singlet/doubletsinglet
Overlap genenone
Upstream genePnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2
Downstream geneRab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099O13.T7 (MSMg01no099_o13.b1)MSMg01-099O13.TJ (MSMg01no099_o13.g1)
ACCAG315736AG315737
length703704
length of high quality
(start - end)
485 (47 - 531)295 (74 - 368)
definitionCHROMAT_FILE: MSMg01no099_o13.b1 PHD_FILE: MSMg01no099_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:35 2005CHROMAT_FILE: MSMg01no099_o13.g1 PHD_FILE: MSMg01no099_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAAATGCTTTACCTTGTAGGGGGAAAAAAAGCACTAGAAAATAA
GCATGTAACTTCTTAGGGGGAAAAAAATTCTGATGTCAAAAGAATGCAGA
ACACTTAAACTTTGGATTCATAGCAGTGCCCCGGGCTCATATCCCTCCTC
TTTTTTTCCAGCTTCAGCCCAGATGTTGGCATGGAGAATGGACACCTGAC
CATCTGCCTGCATAGGAACTTACTCCATATCTGGCAACTTACACAGTCAC
AGCTAACATTGTGCCCCCTGACAGTCTCCCATATCTCCCCACCACCAGGG
CTTGTCTGTTGCGACCATGCATTTGTTCTATGAATGATGAATTCATTCCC
GAGATGAGGACCTTGAACTCCCTGCAATTCGAGGATTACTTAAGACTGGG
CATCTTTCTAAACAGGCTCCTGACTGGCTCTGACATCTAATAACAAAAGG
CCAGGACAGGTGTCTTGCATTTCTAACTGAGAACAAAGAAGGGGGTCGCA
GCATTATGATAACAAGGCTACCTGGCTTGCTATGGTCTGCACCTGTGTGT
TCACACTTCCATATTACACCTATTTTCAGGGCCTTATGATCCAATCATAC
AAATCCTGTTCCATGCTTCGAACTTGGTAGAATGGAAGTTAGGAATCTCC
TCT
CGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTAGAAGAAGGAGAAAAAATGAAAATA
AGCTATTTCAGAGCCCTCCTAGGGACAGACAGAAAACGGGAGATGTCCTG
CTTCCTCTCTGGCTCCTATGGAAATATTTTTAGCTTGGAATAGGATTATC
TGTGTTCTATTTTCTGTTTTTTGGTGCACCAAATTGTCTATATGTCTGTC
AACTCGTGTTTGTTTTTGCTTGGATGATTGAATGATTGATGTTCTGCGTT
TCATGTTGAAAAATAAAAAAGCAGTCTCAGTCTGCACAGCAAAAATTGAC
AAGTTAGCTGCACAGTGTCTGGGAGTCAAGTACAGTTGACAAAGCCCTGC
TGAAGGCTGATTGCAAAAAGCAGCCTTTTGCTTGTAACAGAAAGTTAGAT
TAAAATTGGAAACCCAAGGTTGGAGTTATTCTAAACAACATAAGAAAACA
GGTAATATGCAAAAGCAGTGTACTAAGGGTAGAAAGAGTATGTTTGACAA
TAAAGTACATATCTTTACAAACTAGAAGGGAAACCCTTTCAAGGTATAAT
GGATACAGGATCATATAAAAGCATTATATCTAGCAAGTGGTGGCCTGCTT
TCTTGCCTGTTATTCAATCTTCACATAGCTTACAAGGATTACGACATGAT
GTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_o13.b1 MSMg01no099_o13.b1 CHROMAT_FILE:
MSMg01no099_o13.b1 PHD_FILE: MSMg01no099_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:35 2005
         (485 letters)



>mm_chr19_59813827_59814711
          Length = 885

 Score =  915 bits (473), Expect = 0.0
 Identities = 479/481 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaatgctttaccttgtagggggaaaaaaagcactagaaaataagcatgtaact 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaattccaaatgctttactttgtagggggaaaaaaagcactagaaaataagcatgtaact 626

                                                                       
Query: 65  tcttagggggaaaaaaattctgatgtcaaaagaatgcagaacacttaaactttggattca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcttagggggaaaaaaattctgatgtcaaaagaatgcagaacacttaaactttggattca 566

                                                                       
Query: 125 tagcagtgccccgggctcatatccctcctctttttttccagcttcagcccagatgttggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagcagtgccccgggctcatatccctcctctttttttccagcttcagcccagatgttggc 506

                                                                       
Query: 185 atggagaatggacacctgaccatctgcctgcataggaacttactccatatctggcaactt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atggagaatggacacctgaccatctgcctgcataggaacttactccatatctggcaactt 446

                                                                       
Query: 245 acacagtcacagctaacattgtgccccctgacagtctcccatatctccccaccaccaggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acacagtcacagctaacattgtgccccctgacagtctcccatatctccccaccaccaggg 386

                                                                       
Query: 305 cttgtctgttgcgaccatgcatttgttctatgaatgatgaattcattcccgagatgagga 364
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttgtctgttgcgaccatgtatttgttctatgaatgatgaattcattcccgagatgagga 326

                                                                       
Query: 365 ccttgaactccctgcaattcgaggattacttaagactgggcatctttctaaacaggctcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccttgaactccctgcaattcgaggattacttaagactgggcatctttctaaacaggctcc 266

                                                                       
Query: 425 tgactggctctgacatctaataacaaaaggccaggacaggtgtcttgcatttctaactga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgactggctctgacatctaataacaaaaggccaggacaggtgtcttgcatttctaactga 206

            
Query: 485 g 485
           |
Sbjct: 205 g 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)