BAC Information

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BAC

Clone NameMSMg01-100H05
Chromosome19 (Build37)
Map Location 49,066,557 - 49,066,846
singlet/doubletsinglet
Overlap genenone
Upstream geneGm969, LOC670576, Sorcs3, LOC100042896
Downstream geneLOC629448, Siah1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100H05.T7 (MSMg01no100_h05.b1)MSMg01-100H05.TJ (MSMg01no100_h05.g1)
ACCAG316150AG316151
length793695
length of high quality
(start - end)
296 (113 - 408)244 (51 - 294)
definitionCHROMAT_FILE: MSMg01no100_h05.b1 PHD_FILE: MSMg01no100_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:19 2005CHROMAT_FILE: MSMg01no100_h05.g1 PHD_FILE: MSMg01no100_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCCTCCTCTCCTCCTCTTCTTTTTTTTCTTCACTCCCCCCTCCCCC
CCCCCCCCCCCCCCACCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGCGGAATTCAGAGTTTCCCACGGAGACTAAAGATGGC
TTCTCACCTGGATATTCTTGAAGGTATAACTTCAAAGATCAAAAGCAGTT
TGTAATTGTTGGGTTCTACGCCCAGGAAGAAAGGACAGAGACAATAAAAC
TAATTTTCATGATAAAAGACTTTGATCAGGGGGCAGTGATGTGGACACTT
AGCCAGTGTCAAGAGCCAAGGAATAATTAATCCAAGCACTGATGCGATCA
TGCAGGGACTGTGCAGTAGTGTGGGTGATGTTAGTGGATGGACAAGTAGG
GATTGACAGCAGTTCTACGAGGATTCTGGAGTCGATGTAGATCAGCATCT
CGGGAGTCTCATAATGATTTCTTGGGACGCGAAATTTACAAGAGATATGA
AATCTTGTCATGATCATGGTTGACTTTGACATCTACCACAATCTCCCATA
GAATGAATGTATGCCTCTGCCTGCCCTTGTCTGCCCTCTGGCCTTTTCTC
CACTGTTTATTCAACACCTTGATTTCGCCTACAAATTAACAACAGCCCCC
CTATTTTTTTATTTCCCCCATTTTACAACTAACCCTTCCTTGTAACTCTC
TACCATCCTGCCCCCATATCTACTTTTATTCACTGCGATTTTTCCCGCTT
ATTTGTGATTTTTCTCCACTCCCCCCCCCCGCCCCTCTTTTTC
GGGGGGCGCCATTCAGTAGCAGGGAGGTGAACTATAGAATGACACAAAAA
ATTCCAGGACAGCCATGACTATACAGAGAAACCCTGTCTCAAAAAAAAAA
TGGAAATAGTTCTACCTGTGGATGCAGCTATACCACTCTCGGGCATATAT
CCAAAAGATTCTCCAACATATAATAAGGACACAAGCCCCACTATGTTCAC
AGCAGCCTTATTTATAATAGCCAGAAGCTGGAAACAACCTAGATGTCCAT
GAACAGAGGAATGAATACAGAAAATGTGGTACATAGTACACTATGAAGTA
CTACTCAGCTATTAAAAACTATGATTTCATGAAATTCGCATGCCACCGAA
CGGAACTTGAAAATATCATCCTGAGTGAGATAACCTAATCACAAAAGAAC
ACACATGGTATGTATTCACTGATAAGTGGTTATTAGCCAAAAAGAAGCTC
AGAATACCCAGGACTCAACTCAGAGACCATATGAAGTCCAAGAAGAAAGA
AGATCACACCAAAGCGTTGATGCTACTGTTACCTAATACGGGAAAGAGAA
TGATCTCTGGCAAGTAAAAGGAGAGAGTGATGTGAGAGGTAAAATGGAGG
TGGAGGTTTTGCTTTTTGTCCCACTTTTCTTTTTTTTTTCTATCCCCCCT
TTTTCCTTCTCTTCGTTTCCTCTCCCCCCTTTTTTCCCCCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_h05.b1 MSMg01no100_h05.b1 CHROMAT_FILE:
MSMg01no100_h05.b1 PHD_FILE: MSMg01no100_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:19 2005
         (296 letters)



>mm_chr19_49066354_49067048
          Length = 695

 Score =  501 bits (259), Expect = e-146
 Identities = 283/291 (97%), Gaps = 1/291 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagagtttcccacggagactaaagatggcttctcacctggatattcttgaaggt 63
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagagttt-ccaaggagactaaagatggcttctcacctggatattcttgaaggt 262

                                                                       
Query: 64  ataacttcaaagatcaaaagcagtttgtaattgttgggttctacgcccaggaagaaagga 123
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 263 ataacttcaaagatcaaaagcaatttgtaattgttgggttctacgcccaggaagaaagga 322

                                                                       
Query: 124 cagagacaataaaactaattttcatgataaaagactttgatcagggggcagtgatgtgga 183
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 323 cagagacaataaaactaattttcatgataaaggactttgatcagggggcagtgatgtgga 382

                                                                       
Query: 184 cacttagccagtgtcaagagccaaggaataattaatccaagcactgatgcgatcatgcag 243
            |||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||
Sbjct: 383 tacttagccagtgtcaagagccaaggaataatggatccaagcactgatgcaatcatgcag 442

                                                              
Query: 244 ggactgtgcagtagtgtgggtgatgttagtggatggacaagtagggattga 294
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggactgtgcagtagtgtgggtgatgttagtggatggacaagtagggattga 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 695
Length adjustment: 9
Effective length of query: 287
Effective length of database: 686
Effective search space:   196882
Effective search space used:   196882
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)