BAC Information

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BAC

Clone NameMSMg01-100I21
Chromosome19 (Build37)
Map Location 11,682,542 - 11,847,739
singlet/doubletdoublet
Overlap geneMs4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16
Upstream geneDdb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d
Downstream geneStx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100I21.T7 (MSMg01no100_i21.b1)MSMg01-100I21.TJ (MSMg01no100_i21.g1)
ACCAG316223AG316224
length776767
length of high quality
(start - end)
272 (105 - 376)398 (122 - 519)
definitionCHROMAT_FILE: MSMg01no100_i21.b1 PHD_FILE: MSMg01no100_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:27 2005CHROMAT_FILE: MSMg01no100_i21.g1 PHD_FILE: MSMg01no100_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,682,542 - 11,682,792)(11,847,343 - 11,847,739)
sequence
NNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCNNNTNCCTAAG
ATAGNNNCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAG
AGGATCCGCGGAATTCTCTATTTCACAGAACTGAGAGAATGAATGTGTAT
GTATTATATATACATATATTTATATATTGCAAAGGGAATTTATTAGATGA
GTTTACATGATCCCAGCTAAGCAGTTAAACAGTGCAGAGGAGACGAGTCA
CTCAGCCCATGAAGCTTGATGTCTTCACAGTCTCAATATGGCACTGAAAG
CCTGGGGGATTCCTGGAGATCTGCTAATCTTTAGTCTATGTTGGAAGGCC
AAAGAAGTTGGGTTCAGTTTGGCAGCCATTAATGGGAGCAGCAGCAATAA
TAAGAGCCGATGTGCAAAACTACTCCAGCAGGCGGCAGCACCTCTTCTTT
CCAACCCTCTATCTCTGTATTGCCGCGGGAAGATATTGCCCACTTACAAT
CAGGGAGAGTATTCTCCATCCAGTTAATCCTCCTTTGAAATCCCCTTAAA
GACTGCCCTCCAGTATCTCTCTTCATTGGCTGCATATCTGATTAAGTTCC
CACCCAACACAATATGTTTTTAAAGATTTATTTATTATTATATCTAAGTA
CCCTGCACCTGTCTTCTGATGCACCAAAAGAGGGCTTCATATCTCATTAT
GCATGGTTGTGAGCCACCATGTGGCTGCTATGATTTGCACTCAAGATCTT
TGGCAAATCATTCAGCCCCCCTTACT
NNNNNNNNNNNNNNNNNNNNNNNNTTTCCCTTTCCCCNNTNNACTTTTCT
NNCCCCGATGATGTGCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCCCGCGAAATTCAGTGCAAACTCTCAAGCATCTAGTA
TGGGACTCCTGTGTTTTCAATCCTACACTGTAGAAAAATATATAACTCAC
GTTTCCTTGGGAACCCAGTAGCCTAGTTCTATATCTATTTAAAGAGCAAT
TGGAATGTGGATGTAGGTGTGGCAGTTCTAATGTGGAGGAAGAGACTAGA
ATCAACTCAAAGAGAAGAAAACTTTGTTAATCTCTTTTATCACTCACCAA
AATTGCAAAATTGCCTTCTGTAATGTCAGTGGCTTCAGTTGAAGGCCCTC
GTATGTCCTTCAAATTTTTAGGTTCTCTTCTTACTTTTGGCACAAGTGGG
ACTCTTTCAACAAATTTAAGCTTGGACCTTTCAGGGATGGAGACATCTAG
CAGGAGCAAAGACAATCATGAATAAGTGAAGGTGCACGACGCATAGGGCC
TAATGACTAATAATTCCAGCGGTTACCATTTGCCTCTGGATGTTTCTAGC
GACACTGGATTCTTTCCAGCTATAACAATGCTTATATTAAAGGTTCTCAG
CCAAATTCCCTTATTACCCCCCTGCATGTTCAGCCCCCTATTTGAAGGGA
CTGTTCCCCTTAATTACTCCCTTCATTGGTAAAGCAGCCTTGGAAAACCG
AAGAAGTACTCTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_i21.b1 MSMg01no100_i21.b1 CHROMAT_FILE:
MSMg01no100_i21.b1 PHD_FILE: MSMg01no100_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:27 2005
         (272 letters)



>mm_chr19_11682321_11682992
          Length = 672

 Score =  470 bits (243), Expect = e-137
 Identities = 249/251 (99%)
 Strand = Plus / Plus

                                                                       
Query: 22  cagaactgagagaatgaatgtgtatgtattatatatacatatatttatatattgcaaagg 81
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 cagaactgagagaatgaatgtgtatgtattatatatacatatatttatatattgcaaagg 281

                                                                       
Query: 82  gaatttattagatgagtttacatgatcccagctaagcagttaaacagtgcagaggagacg 141
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gaagttattagatgagtttacatgatcccagctaagcagttaaacagtgcagaggagacg 341

                                                                       
Query: 142 agtcactcagcccatgaagcttgatgtcttcacagtctcaatatggcactgaaagcctgg 201
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 342 agtcactcagcccatgaagcttgatgtcttcacagtctcaatctggcactgaaagcctgg 401

                                                                       
Query: 202 gggattcctggagatctgctaatctttagtctatgttggaaggccaaagaagttgggttc 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggattcctggagatctgctaatctttagtctatgttggaaggccaaagaagttgggttc 461

                      
Query: 262 agtttggcagc 272
           |||||||||||
Sbjct: 462 agtttggcagc 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no100_i21.g1 MSMg01no100_i21.g1 CHROMAT_FILE:
MSMg01no100_i21.g1 PHD_FILE: MSMg01no100_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:27 2005
         (398 letters)



>mm_chr19_11847143_11847940
          Length = 798

 Score =  760 bits (393), Expect = 0.0
 Identities = 396/397 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcagtgcaaactctcaagcatctagtatgggactcctgtgttttcaatcctacactgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 attcagtgcaaactctcaagcatctagtatgggactcctgtgttttcaatcctacactgt 538

                                                                       
Query: 61  agaaaaatatataactcacgtttccttgggaacccagtagcctagttctatatctattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 agaaaaatatataactcacgtttccttgggaacccagtagcctagttctatatctattta 478

                                                                       
Query: 121 aagagcaattggaatgtggatgtaggtgtggcagttctaatgtggaggaagagactagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aagagcaattggaatgtggatgtaggtgtggcagttctaatgtggaggaagagactagaa 418

                                                                       
Query: 181 tcaactcaaagagaagaaaactttgttaatctcttttatcactcaccaaaattgcaaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tcaactcaaagagaagaaaactttgttaatctcttttatcactcaccaaaattgcaaaat 358

                                                                       
Query: 241 tgccttctgtaatgtcagtggcttcagttgaaggccctcgtatgtccttcaaatttttag 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tgccttctgtaaagtcagtggcttcagttgaaggccctcgtatgtccttcaaatttttag 298

                                                                       
Query: 301 gttctcttcttacttttggcacaagtgggactctttcaacaaatttaagcttggaccttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gttctcttcttacttttggcacaagtgggactctttcaacaaatttaagcttggaccttt 238

                                                
Query: 361 cagggatggagacatctagcaggagcaaagacaatca 397
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 cagggatggagacatctagcaggagcaaagacaatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)