BAC Information

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BAC

Clone NameMSMg01-101B15
Chromosome19 (Build37)
Map Location 14,397,577 - 14,521,918
singlet/doubletdoublet
Overlap geneEG667433
Upstream geneOlfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505
Downstream geneTle4, EG433225, EG635497, Pomc-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101B15.T7 (MSMg01no101_b15.b1)MSMg01-101B15.TJ (MSMg01no101_b15.g1)
ACCAG316603AG316604
length810748
length of high quality
(start - end)
204 (124 - 327)248 (72 - 319)
definitionCHROMAT_FILE: MSMg01no101_b15.b1 PHD_FILE: MSMg01no101_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:11 2005CHROMAT_FILE: MSMg01no101_b15.g1 PHD_FILE: MSMg01no101_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,397,577 - 14,397,780)(14,521,673 - 14,521,918)
sequence
CCCCCCTTTCNCCCCCCCCCCTCACTCCCCACCCTTCCCCCCATTTACTA
CTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCG
CGGAATTCTGAACTTTTTCATCAATTTTGAAATTATCTGCATTATCAAGT
TGAGTAATGAAGAAGCCATTTGTCTTATGTGTCTCTGTAACTCACAGGAA
GTGACTAGTGGTCCAAGAAAACATGTCCATCGGGTGTCTAAGGAAAGATA
AAATTCTGTACAGGTAAGTGAAGAAATATTATAACCAAATCCAAGGTAAT
TAAATTTGGATTTGAAATAAAGCTACATGGTCTCAGCATTCAAATAAAGT
GATGATACCCTCATATACTAAAAGCATTTTTTTTGTACCATTTCCTTAGA
ACAATCACTCCTTTCAGTTTGGGGTGACTGTTATTTATCACAAACAACAT
TATAATTTCTATGTATTATGTATAAGGTACTGGAATAGACCAGAATGAAC
GTTTACAGAATCCCTAGTGATTCTTGCATCCCCTGCCACATATTGTATGG
GAGCTATTATTATAGTTATATCTATCAGTATTCTGTAAAAAAACCCCTCA
TTTAACAAAACGGCAGATAAATCTTCATCTCTAATGTGCACATTGTCTAT
TTTATCCTTTTCCTTCATTGTCTACTTCTCCCAGTTTCCCGTCCCGCTTG
TATTTGCTTTTATTAACTTTCCTCGTATGTTTGTAAGTTCGGTTGGTTTT
TTCTTTGTTGTTCCTTTTTTATTTTTTAACTAAAATCAAGGATCGTTTCT
ACAATCACTT
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXGTTATTCACCCATGTAGACCAAATCAGCA
AGTCCAGTGAGATGCCATAAGCTGGCTGCATTGCAGGATGGTGTGCAAAT
CCACTGAAGCTGCTGAGAAATAAGAGATCATTTCTTAAGATAGTAAGTGA
CTATCCATAGAGATCAACTCGAGGTGGGGAGACACTCTTTGTTGGGCGTG
GAAGGAATAATGGATATAGAGAGGGCCTTGAACTTCTGTTAGTTACTCAT
CGGCATGGTTCTGACAATATTTTTTGTCAGAAGGAAATAACACGTTTGCA
CATCAGAAAACACAACTTATACGTCTGGTAGGGTTACCCAGAGAGGCATA
GAGAATTGGCTTTATAAACTGACTCTGTGGCAGTTGTTGTCGCTAGATAA
CGCTGAGAGCTTATCCATTCCCCAGTACTGGGCTTATAAAAGTATATTCT
TTCTTATCTCTGTGACAGATCACCTGGTGGAACCTATTTAACGTAGGTAA
GTTGTCTTGGCGGGCAGAGGGGCAGGCCAATTGTTCGGTTGCTTCTTTGC
TCCCTGTCACACAGCGGTTTCAGTCCACTAAAAATGTTTCGGTATCAGTA
TTGGTTCCCCTTTGTGACCGCCCGCTCTCGCTTTTAACCTCCTTGCGTTT
ATTGGTAACCCTCGTCCAAGTCCTGCAAACATGTGGCGTTAAAACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_b15.b1 MSMg01no101_b15.b1 CHROMAT_FILE:
MSMg01no101_b15.b1 PHD_FILE: MSMg01no101_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:11 2005
         (204 letters)



>mm_chr19_14397377_14397980
          Length = 604

 Score =  387 bits (200), Expect = e-112
 Identities = 203/204 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttgaaattatctgcattatcaagttgagtaatgaagaagccatttgtcttatgtgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttgaaattatctgcattatcaagttgagtaatgaagaagccatttgtcttatgtgtc 260

                                                                       
Query: 61  tctgtaactcacaggaagtgactagtggtccaagaaaacatgtccatcgggtgtctaagg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 tctgtaactcacaggaagtgactagtggtccaagaaaacatgtccatcgggtgtctaatg 320

                                                                       
Query: 121 aaagataaaattctgtacaggtaagtgaagaaatattataaccaaatccaaggtaattaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagataaaattctgtacaggtaagtgaagaaatattataaccaaatccaaggtaattaa 380

                                   
Query: 181 atttggatttgaaataaagctaca 204
           ||||||||||||||||||||||||
Sbjct: 381 atttggatttgaaataaagctaca 404


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no101_b15.g1 MSMg01no101_b15.g1 CHROMAT_FILE:
MSMg01no101_b15.g1 PHD_FILE: MSMg01no101_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:11 2005
         (248 letters)



>mm_chr19_14521473_14522120
          Length = 648

 Score =  460 bits (238), Expect = e-134
 Identities = 244/246 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttattcacccatgtagaccaaatcagcaagtccagtgagatgccataagctggctgcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gttattcacccatgtagaccaaatcagcaagtccagtgagatgccataagctggctgcat 387

                                                                       
Query: 61  tgcaggatggtgtgcaaatccactgaagctgctgagaaataagagatcatttcttaagat 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgcaggatggtatgcaaatccactgaagctgctgagaaataagagatcatttcttaagat 327

                                                                       
Query: 121 agtaagtgactatccatagagatcaactcgaggtggggagacactctttgttgggcgtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agtaagtgactatccatagagatcaactcgaggtggggagacactctttgttgggcgtgg 267

                                                                       
Query: 181 aaggaataatggatatagagagggccttgaacttctgttagttactcatcggcatggttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 266 aaggaataatggatatagagagggccttgaacttctgttagttactcgtcggcatggttc 207

                 
Query: 241 tgacaa 246
           ||||||
Sbjct: 206 tgacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)