BAC Information

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BAC

Clone NameMSMg01-101I05
Chromosome19 (Build37)
Map Location 9,439,446 - 9,440,061
singlet/doubletsinglet
Overlap genenone
Upstream geneC730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137
Downstream geneLOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101I05.T7 (MSMg01no101_i05.b1)MSMg01-101I05.TJ (MSMg01no101_i05.g1)
ACCAG316906AG316907
length707872
length of high quality
(start - end)
613 (67 - 679)---
definitionCHROMAT_FILE: MSMg01no101_i05.b1 PHD_FILE: MSMg01no101_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:45 2005CHROMAT_FILE: MSMg01no101_i05.g1 PHD_FILE: MSMg01no101_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:45 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
ATCATTCTCTAGAAAAGATTTTTCTTCCCATAATAACTCTCTATGAAATC
TGACATTTATTAGTAGGGTTATACAGACTCTCAAGACAAAAAGAGACCTA
CATAAAATGTGGACCAAAGCATTCTTCAAACTGAGTATACATTCAATGCA
TGTTGCACTTAAATATGTTTTCCACAACAGAAATGCGTATTTTGGTGCAT
GGATGAAAACTCCCACTTCATGTTTTGTTATACCCAAATGTTTCCTGTGA
AAACCTTTTTTTTTTAAATGAAACTTTAAGTTATATAAGGTGATTATAAA
ACAATGAATTTCATTATGACCTTTTCACACACATGCATCATTTTGATTTG
GTCATATGGCACTATCAATACCCTCTGTTAACATTCTTACTACAAAGTGT
TCTTCCTCTACTTTCATGTCATAAAGATTTTCATAGAGTAATAGATATAT
ATGTGTTTAGAAATTTGGAATGAACAAAGAATGATAATCAATGAAATGAC
TCTCTGTAAGAGTTTTAATCAGGAGCAAAAGATAATAAGCTTCTTCTGGA
ACTCAAAGAGAAGAAAGGTCAACAAGAAAACCCGATTGCAACAAAGGGTC
TGTGGTGGTGCACTGACACTAACCACTAGAACCATCAGAAATGAAAACAA
AATAAGT
ACCAAATTCTAATCAACCCCCTATTTAAATCCCCTCNTCCCCCGCCCTCC
ATNCTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTCCCCCGAATCTATTGAGAATTTTTGCATCGAT
ATTGATAAGGGAAATTGCCCTGAAGTTCCCTATCTTTGTTGCGCCCTTCT
ACGGTTTAGGCCCCTAAGTAATTGTGGTTTCATAAAATAAAAAGGATACA
AGACCTACTAGATCTATTTTGAGGAATAGTTTGATATTAACTGTGTTTAC
TTCTTTCTTGAATTTATAGATAAAAGTCTGTACTGCATCCTTTCTGGCCT
TGTATTTTTTATGATAGTTATATTTTTGATTTTTTGTTTTTATTAACTTT
GAAAGATATATGACAGACAGCGATAATTAAACCTGATCCTGAGTTTATCT
TTGGTTATTTGTTATATTGTTTATAAATATTTACTAATAACAACAAACAT
TTACTAAATTGGGCTGATTCCTTTCTTTTCTTTATACCAGTTTATTTACG
CTAACCCTGACAACCCTTTTATATTTCTCGGCTGTCTTTTTCTACAGTAT
AATCTATAAAGTGAAAAAAGGTTTTTTTAAGTCTAAATTTCATTTTCAAT
CTTTTCTTTTGCATATGATTAATTATACCCACTCTTTCTTACATTTATAC
TTCCTTCTTCCTCCGTAGATATTAACATTATTACATTACTACTCTTCACC
TCCTTATTTCGCCATACCTCTCCCTTCTCCCCCTCCCCTCCACTTTTCTC
TCCTAAATTTCTATTATCTTTAAATTTCTTTTCTTTCTTTCCTTATCTCA
CTACTTAATATATCACATTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_i05.b1 MSMg01no101_i05.b1 CHROMAT_FILE:
MSMg01no101_i05.b1 PHD_FILE: MSMg01no101_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:45 2005
         (613 letters)



>mm_chr19_9439245_9440261
          Length = 1017

 Score = 1137 bits (588), Expect = 0.0
 Identities = 608/616 (98%), Gaps = 4/616 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   atttttcttcccata-ataactctctatgaaatctgacatttattagtagggttatacag 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 atttttcttcccatacataactctctatgaaatctgacatttattagtagggttatacag 261

                                                                       
Query: 61  actctcaagacaaaaagagacctacataaaatgtggaccaaagcattcttcaaactgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 actctcaagacaaaaagagacctacataaaatgtggaccaaagcattcttcaaactgagt 321

                                                                       
Query: 121 atacattcaatgcatgttgcacttaaatatgttttccacaacagaaatgcgtattttggt 180
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 322 atacattctatgcatgttgcacttaaatatgttttccacaacagaaatgcgtattttgat 381

                                                                       
Query: 181 gcatggatgaaaactcccacttcatgttttgttatacccaaatgtttcctgtgaaaacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gcatggatgaaaactcccacttcatgttttgttatacccaaatgtttcctgtgaaaacct 441

                                                                       
Query: 241 ttttttttt---aaatgaaactttaagttatataaggtgattataaaacaatgaatttca 297
           |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttttttttttttaaatgaaactttaagttatataaggtgattataaaacaatgaatttca 501

                                                                       
Query: 298 ttatgaccttttcacacacatgcatcattttgatttggtcatatggcactatcaataccc 357
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 502 ttatgaccttttcacacacatgcatcattttgatttggtcatatggtactatcaataccc 561

                                                                       
Query: 358 tctgttaacattcttactacaaagtgttcttcctctactttcatgtcataaagattttca 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tctgttaacattcttactacaaagtgttcttcctctactttcatgtcataaagattttca 621

                                                                       
Query: 418 tagagtaatagatatatatgtgtttagaaatttggaatgaacaaagaatgataatcaatg 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tagagtaatagatatatatgtgtttagaaatttggaatgaacaaagaatgataatcaatg 681

                                                                       
Query: 478 aaatgactctctgtaagagttttaatcaggagcaaaagataataagcttcttctggaact 537
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 682 aaatgactctctgtaagagttttaatcaggagcaaaagatagtaagcttcttctggaact 741

                                                                       
Query: 538 caaagagaagaaaggtcaacaagaaaacccgattgcaacaaagggtctgtggtggtgcac 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 caaagagaagaaaggtcaacaagaaaacccgattgcaacaaagggtctgtggtggtgcac 801

                           
Query: 598 tgacactaaccactag 613
           ||||||||||||||||
Sbjct: 802 tgacactaaccactag 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1017
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1007
Effective search space:   607221
Effective search space used:   607221
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)