BAC Information

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BAC

Clone NameMSMg01-102D16
Chromosome19 (Build37)
Map Location 20,705,862 - 20,706,147
singlet/doubletsinglet
Overlap geneAldh1a1
Upstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549
Downstream geneAldh1a7, Tmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102D16.T7 (MSMg01no102_d16.b1)MSMg01-102D16.TJ (MSMg01no102_d16.g1)
ACCAG317433AG317434
length759722
length of high quality
(start - end)
243 (128 - 370)286 (72 - 357)
definitionCHROMAT_FILE: MSMg01no102_d16.b1 PHD_FILE: MSMg01no102_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:45 2005CHROMAT_FILE: MSMg01no102_d16.g1 PHD_FILE: MSMg01no102_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCNNNNCCATAGA
TATNNNNTTATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTTACTTTCCGAAACCGAATGGCTGAGAAGCACTTG
AAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGAAAATCAAAACAAC
CCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAG
GTGACAACAGATGCTGGCCAGGATGTGGAGAAAGAGGAACACTCCTCCAT
TGTTGCTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCG
GTTCCTCAGAAAATTGGTCATATTATTATTGGAGGATCCCACAATACCTC
TCCTGGGCATATTTTTTTTTTATGCCCCCCCCCCCCAGGGCACATGCTCC
ACTATGTTCATAGCAGCCTTATTTATAATAACAAAAATGCTGACAGAACC
CAGATGTCCCTCAACAGAGGAATGCATACATAAAATGTGTTATATTTACA
CAATGGAGTACTACTCAGCTATCATAAATATGAAATTATTTAATTCCCAG
GCAAACGGACAGACCTGTAGGATATCATCCCTCATTGAGTGTAATCAATT
CACAAAAGAACTCAATTGATTATTATTCCATTGACAATTGTATATTTACC
CTATAAATCCTATATTTACCATTGATAACTCTCTCCCAACAACATTTATT
TCTCTTATG
GATGAAGTGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATACACATTGCACTGTCATGAACACCACATAG
ACAAAAGAAGAAAGAAAAAATAGACAATATTATCAATTGTTTGCTTTCTT
CAATCTGTATGCTTTTGATTCCTATTACAATTCTTAGACCTCTTGGAAAT
CCATATATATTTCTCTCATTTCTCCCTTGTAATCAGTCTTCCACCTCAGC
CATTATTCTATGAGTCTAAGCAGGAAAGCAGACCTGAGTACTCAGCAGTG
TCCTCATTCTCTCTGATATATTAGGTCATCAATGGTTCTTGCAAGTCCTG
TTTCTGGTTTATTTCTGACCCCCCCCTCCCTTTAGTTATCAAAAGCTAGG
GTTTCCCTAGGGGCTCTGGGTATTCTGTGTCATTAGATCTACTGTAAATA
TGAATGTCTTTGTCTTTCTCACTTAAGCCACATTTTCCTCTTGCATAGCT
TTTATTCATGGTCTGTTATAATCTGCTGTTCAAGACTTTGTTCCTGTGAC
TCTGATGTCACTCCTAACTCTGGATCCTGTTCTACAACAGTGATCCTCCA
CCTGAGGGTCTTTCCCCCCGGAGATGAACACTTTATCTGTAAGAAGGTTA
AGCTGTTAATATCCTCATGTTCACCTGTGCGCTCTATGTGGGCTTTTCGG
TCATCCCAACTAATCCTGTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_d16.g1 MSMg01no102_d16.g1 CHROMAT_FILE:
MSMg01no102_d16.g1 PHD_FILE: MSMg01no102_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:45 2005
         (286 letters)



>mm_chr19_20705662_20706347
          Length = 686

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacattgcactgtcatgaacaccacatagacaaaagaagaaagaaaaaatagacaatatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacattgcactgtcatgaacaccacatagacaaaagaagaaagaaaaaatagacaatatt 260

                                                                       
Query: 61  atcaattgtttgctttcttcaatctgtatgcttttgattcctattacaattcttagacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcaattgtttgctttcttcaatctgtatgcttttgattcctattacaattcttagacct 320

                                                                       
Query: 121 cttggaaatccatatatatttctctcatttctcccttgtaatcagtcttccacctcagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttggaaatccatatatatttctctcatttctcccttgtaatcagtcttccacctcagcc 380

                                                                       
Query: 181 attattctatgagtctaagcaggaaagcagacctgagtactcagcagtgtcctcattctc 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attattccatgagtctaagcaggaaagcagacctgagtactcagcagtgtcctcattctc 440

                                                         
Query: 241 tctgatatattaggtcatcaatggttcttgcaagtcctgtttctgg 286
           ||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgacatatgaggtcatcaatggttcttgcaagtcctgtttctgg 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)