Query= MSMg01no103_i06.b1 MSMg01no103_i06.b1 CHROMAT_FILE:
MSMg01no103_i06.b1 PHD_FILE: MSMg01no103_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:28 2005
(301 letters)
>mm_chr19_52274836_52275536
Length = 701
Score = 543 bits (281), Expect = e-159
Identities = 296/301 (98%)
Strand = Plus / Minus
Query: 1 tctcctctcactgctcctttcccaccttcccctccaggcacagaatgctttcatgtcaca 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 tctcctctcactgctcctttcccaccttcccctccaggcacataatgctttcatgtcaca 442
Query: 61 catgttctatcacattctcctccaacttcttccttggcacaccccttaaaactcttcttt 120
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 catgttctatcacattctcctccaacttcttcctcagcacaccccttaaaactcttcttt 382
Query: 121 ccagtgttttaggctctggccatgatcagaaacatgcacactaaacctggttgtcctatg 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagtgttttaggctctggccataatcagaaacatgcacactaaacctggttgtcctatg 322
Query: 181 ggagagaccatgaattgaatttttctgagcttgggacaccttgattaatggaatactttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagagaccatgaattgaatttttctgagcttgggacaccttgattaatggaatactttt 262
Query: 241 ctacttcagtcatttttctaaaattttcagaatttaatttttcttttacatcggagtgaa 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctacttcagtcattttcctaaaattttcagaatttaatttttcttttacatcggagtgaa 202
Query: 301 a 301
|
Sbjct: 201 a 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space: 202064
Effective search space used: 202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no103_i06.g1 MSMg01no103_i06.g1 CHROMAT_FILE:
MSMg01no103_i06.g1 PHD_FILE: MSMg01no103_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:28 2005
(535 letters)
>mm_chr19_52169622_52170556
Length = 935
Score = 913 bits (472), Expect = 0.0
Identities = 503/518 (97%), Gaps = 8/518 (1%)
Strand = Plus / Plus
Query: 26 tatttatttatttatttatttatttatttttgtcaaatagggaataaaaggggtttattc 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tatttatttatttatttatttatttatttttgtcaaatagggaataaaaggggtttattc 277
Query: 86 tggaaaagtgttttagaagcataggggtatttctatcctaaagatgactttgcaaaaact 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tggaaaagtgttttagaagcataggggtatttctatcctaaagatgactttgcaaaaact 337
Query: 146 gtgactatgaccctttaaagttccagccttttggaactaactacagtcacctattttttt 205
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gtgactatgatcctttaaagttccagccttttggaactaactacagtcacctattttttt 397
Query: 206 atgagct--------ctcttagcaaaacaaaacaatccattgaacactgagcctagtaat 257
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 atgagcttgatttctctcttagcaaaacaaaacaatccattgaacactgagcctagtaat 457
Query: 258 ctgcattggagacattccaaatataagagggctctgcaaaataattttatatttctcctc 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ctgcattggagacattccaaatataagagggctctgcaaaataattttatatttctcctc 517
Query: 318 tatgttccttgatctgctctagatattttgcttatatttcataatgatgtacactcaaaa 377
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 518 tatgttccttgatctgcactagatattttgcttatatttcataatgatgtccactcaaaa 577
Query: 378 ttttcccatgaaaaggtgatatctgctttctgacacatagaagtgtaaatgttttttcct 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ttttcccatgaaaaggtgatatctgctttctgacacatagaagtgtaaatgttttttcct 637
Query: 438 tctttctagaactcaatggttacactatataaaatgtgttttaggcactaaatatgaatc 497
|||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tctttctaaaacgcaatgtttacactatataaaatgtgttttaggcactaaatatgaatc 697
Query: 498 acaaagttatattctattttataattccatttctgaaa 535
|||||||||||||||||||||||||||||||| |||||
Sbjct: 698 acaaagttatattctattttataattccatttttgaaa 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
