Query= MSMg01no103_l23.b1 MSMg01no103_l23.b1 CHROMAT_FILE:
MSMg01no103_l23.b1 PHD_FILE: MSMg01no103_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:46 2005
(470 letters)
>mm_chr19_34145915_34146784
Length = 870
Score = 866 bits (448), Expect = 0.0
Identities = 462/470 (98%), Gaps = 6/470 (1%)
Strand = Plus / Minus
Query: 1 gaaaccataatgattttatgacctgaaaaattatgcattagccacaagttggtatttaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gaaaccataatgattttatgacctgaaaaattatgcattagccacaagttggtatttaaa 483
Query: 61 gaaacaccctccaatttcccagaaattttatgcaatttacctaaaagcccagaatttctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gaaacaccctccaatttcccagaaattttatgcaatttacctaaaagcccagaatttctc 423
Query: 121 ttcatttgctgagagagttttgtgtcttcttgaccaagtgtttcctcgactgtttcccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttcatttgctgagagagttttgtgtcttcttgaccaagtgtttcctcgactgtttcccat 363
Query: 181 ccacacatcataacctgcatctgctagtatgaaccctaggcttccattggcaaaattctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ccacacatcataacctgcatctgctagtatgaaccctaggcttccattggcaaaattctc 303
Query: 241 aagccagtaggcattgtctgcaaacaaggcatgttgcatatatacaacaggccggggtcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aagccagtaggcattgtctgcaaacaaggcatgttgcatatatacaacaggccggggtcc 243
Query: 301 tgggcgtgaagagagaaagcaagagaaatttacattatagaaacacacacatacacacac 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tgggtgtgaagagagaaagcaagagaaatttacattatagaaacacacacatacacacac 183
Query: 361 atacacacacacacacacacacacacacacacatacacacacacacacacgcacatgcac 420
||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 182 atacacacacacacacacacacacacacacaca------cacacacacacgcacatgcac 129
Query: 421 acacacatgcacagcatgtcctctcctcttgtcactagtatattagtgta 470
||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 acacacatgtacagcatgtcctctcctcttgtcactagtatattagtgta 79
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no103_l23.g1 MSMg01no103_l23.g1 CHROMAT_FILE:
MSMg01no103_l23.g1 PHD_FILE: MSMg01no103_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:46 2005
(567 letters)
>mm_chr19_34034471_34035437
Length = 967
Score = 1081 bits (559), Expect = 0.0
Identities = 565/567 (99%)
Strand = Plus / Plus
Query: 1 tatgtttttcccccaaaactcttagaccaaaatcctcttcagttacagtgaaagaccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgtttttcccccaaaactcttagaccaaaatcctcttcagttacagtgaaagaccaaa 260
Query: 61 agaacacaccatattttcttttagtttttatttaagaaaatgagtgaagaaacatagtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaacacaccatattttcttttagtttttatttaagaaaatgagtgaagaaacatagtca 320
Query: 121 atcagcttactatttgctggtggactgaattcaaatcatcttagaacaataaagcttttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcagcttactatttgctggtggactgaattcaaatcatcttagaacaataaagcttttc 380
Query: 181 atttccaacttgttctttataatgaagtatcatctttgcctttacaaatttagtggctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttccaacttgttctttataatgaagtatcatctttgcctttacaaatttagtggctgt 440
Query: 241 caatgacaaccagggcacaagagaagcagaaccttagcatgtgttaatatataaacacac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caatgacaaccagggcacaagagaagcagaaccttagcatgtgttaatatataaacacac 500
Query: 301 ttagtatttgataattcccaatgttgcgttttacttttatattcattttacttctagtta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttagtatttgataattcccaatgttgcgttttacttttatattcattttacttctagtta 560
Query: 361 cttgactcgtggagctttgaaaagcagtagattatggattaacttttttccctgacaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgactcgtggagctttgaaaagcagtagattatggattaacttttttccctgacaata 620
Query: 421 attacttcttcactatttctggcatatatttaagtattgttataaaaatatggatgctaa 480
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 621 attacttcttcactatttctggtatatgtttaagtattgttataaaaatatggatgctaa 680
Query: 481 caataatttacattgttcaaactctaaccaggaaatttcataaagactacatggcatgat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caataatttacattgttcaaactctaaccaggaaatttcataaagactacatggcatgat 740
Query: 541 tcaattgttcttaacaatcaagggccg 567
|||||||||||||||||||||||||||
Sbjct: 741 tcaattgttcttaacaatcaagggccg 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
