Query= MSMg01no104_g02.b1 MSMg01no104_g02.b1 CHROMAT_FILE:
MSMg01no104_g02.b1 PHD_FILE: MSMg01no104_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:37 2005
(437 letters)
>mm_chr19_48255815_48256651
Length = 837
Score = 725 bits (375), Expect = 0.0
Identities = 417/437 (95%), Gaps = 10/437 (2%)
Strand = Plus / Plus
Query: 1 gcccctctagattaccaatggaggctgaaagggagtcggagaaacaagccccaagacatt 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 gcccctctagattaccaatggaggctgaaagggaatcggagaaacaagccccaagacatt 260
Query: 61 gttagcctgcaaagggaccagaaatggggtggcatcacttctgaaatggtaagtcagtaa 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 gttagcctgcaaagggaccagaaatggggtggcatcactcctgaaatggtaagtcagtaa 320
Query: 121 gagatggaacctagctgagatgaatccaacgttctgcataatagtatttattaagaactt 180
||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 gagatggaacctagctgagatgaatccaacgttctgcataa----------taagaactt 370
Query: 181 acaacatgactgatgcattgctaagcactttgtgtagggtccttgtttaaccttcagcac 240
||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 371 acaacattaccgatgcattgctaagcgctttgtgtagggtccttgtttaaccttcagcac 430
Query: 241 aatctgcagggaggtctatgactctctgagctttacagatactcaacttcagggatttcc 300
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aatctgcagggagggcgatgactctctgagctttacagatactcaacttcagggatttcc 490
Query: 301 ctcctacagccagtgaaaggttaccacttcccaaagcagctgctgaaaagtgtgcaggtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 491 ctcctacagccagtgaaaggttaccacttcccaaagcagctgctgaaaagtatgcaggtg 550
Query: 361 gaggggcttccctgaagcccaggcttccctgtactcattaattcattatacagctgttgc 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 551 gaggggcttccctgaagcccaggcttccctgtactcattaattcattaaacagctgttgc 610
Query: 421 tagagcttcttctacct 437
|||||| ||||||||||
Sbjct: 611 tagagcatcttctacct 627
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space: 354384
Effective search space used: 354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no104_g02.g1 MSMg01no104_g02.g1 CHROMAT_FILE:
MSMg01no104_g02.g1 PHD_FILE: MSMg01no104_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:37 2005
(171 letters)
>mm_chr19_48425803_48426373
Length = 571
Score = 315 bits (163), Expect = 8e-91
Identities = 169/171 (98%)
Strand = Plus / Minus
Query: 1 aactctcaaattttcaggatcttttttctcttctatcacatgtatgccctctaccatctt 60
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 371 aactctcaaattttcaggatcttttttctcttctatcacatggatggcctctaccatctt 312
Query: 61 tcccatgaagctccccctgccctccttttttatttactccccatctctgaaaaccccaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tcccatgaagctccccctgccctccttttttatttactccccatctctgaaaaccccaac 252
Query: 121 taagaaatggtttgctaatgtttttcctttctctgtgtctgcctgaagcta 171
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 taagaaatggtttgctaatgtttttcctttctctgtgtctgcctgaagcta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 571
Length adjustment: 8
Effective length of query: 163
Effective length of database: 563
Effective search space: 91769
Effective search space used: 91769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
