Query= MSMg01no106_e18.b1 MSMg01no106_e18.b1 CHROMAT_FILE:
MSMg01no106_e18.b1 PHD_FILE: MSMg01no106_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:31 2005
(359 letters)
>mm_chr19_55809389_55810147
Length = 759
Score = 679 bits (351), Expect = 0.0
Identities = 357/359 (99%)
Strand = Plus / Minus
Query: 1 gggtcaaaatcaacaaccttccctattgtaaaatcccgattatttctgtccattcaggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gggtcaaaatcaacaaccttccctattgtaaaatcccgattatttctgtccattcaggac 473
Query: 61 gtgtgtccatcatgtttctaatgaaacattcttttggctgagagagaagaggaaagtgaa 120
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gtgtgtggatcatgtttctaatgaaacattcttttggctgagagagaagaggaaagtgaa 413
Query: 121 gtgagtcccagggtccagagtgactttggatctcactgtagacagcagcctgcagcacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gtgagtcccagggtccagagtgactttggatctcactgtagacagcagcctgcagcacaa 353
Query: 181 ggttcaacgctgacaaagcttccagtgactgtcatcatgagcaaacgcggctttttcata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ggttcaacgctgacaaagcttccagtgactgtcatcatgagcaaacgcggctttttcata 293
Query: 241 gcctgagggcacactgtaaatacccagagcaggcgagaaggcattaatcgttactcctta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gcctgagggcacactgtaaatacccagagcaggcgagaaggcattaatcgttactcctta 233
Query: 301 aagattcccagagagcgaaactgagtgtttctacacacacacacacacacacacacaca 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 aagattcccagagagcgaaactgagtgtttctacacacacacacacacacacacacaca 174
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space: 262500
Effective search space used: 262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_e18.g1 MSMg01no106_e18.g1 CHROMAT_FILE:
MSMg01no106_e18.g1 PHD_FILE: MSMg01no106_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:31 2005
(244 letters)
>mm_chr19_55675385_55676028
Length = 644
Score = 410 bits (212), Expect = e-119
Identities = 240/256 (93%), Gaps = 12/256 (4%)
Strand = Plus / Plus
Query: 1 aggaaaggagaattagttttctccagggacaggcttcctgcctagtctcatctgagtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 aggaaaggagaattagttttctccagggacaggcttcctgcctagtctcatctgagtgtt 248
Query: 61 aagccctgg------acacacacacacacacacacacacacacacacat------ttact 108
|||| ||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 249 tagccttggacacacacacacacacacacacacacacacacacacacatacacacttact 308
Query: 109 cacaaaagaatagactgaatttgagggggaattaagataaatttaaggagggagggagag 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 cacaaaagaatagactgaatttgagggggaattaagataaatttaaggagggagggagag 368
Query: 169 acaagggtgacgtatataacactgttcatgtctgaatcctcaaaaaaataaaaatttaat 228
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 acaagggtgacgtagataacactgttcatgtctgaatcctcaaaaaaataaaaatttaat 428
Query: 229 atatagatagttccag 244
| ||||||||||||||
Sbjct: 429 aaatagatagttccag 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
