BAC Information

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BAC

Clone NameMSMg01-107B14
Chromosome19 (Build37)
Map Location 38,661,137 - 38,661,529
singlet/doubletsinglet
Overlap genePlce1
Upstream geneExoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483
Downstream geneEG667587, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29, Cyp2c38, Cyp2c39
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-107B14.T7 (MSMg01no107_b14.b1)MSMg01-107B14.TJ (MSMg01no107_b14.g1)
ACCAG321006AG321007
length1,3891,358
length of high quality
(start - end)
246 (46 - 291)498 (135 - 632)
definitionCHROMAT_FILE: MSMg01no107_b14.b1 PHD_FILE: MSMg01no107_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:29 2005CHROMAT_FILE: MSMg01no107_b14.g1 PHD_FILE: MSMg01no107_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGATTATNTTNNNGCCATTCGGCGCTAACGACTCCTATANGGAGAGGAT
CCGCGGAATTCACTGTGTAGACCAGGCCATTTACAAACCCATAGAGATCT
GCCTGCCTCTGCCTCCCTCCTCCTGGGATTAAAGGCGTGTGCCACCACTG
CTGATGGCTGAGCGTTTCATATGAGGTTGCAGATACTGGTTGCTGCTGTA
ATTCCTGGAAGCCTTGACTGAGGCCAGAGGAGCCTTTCTCAAGATGATGC
ACTCGCATGCCATTGGCGGGGGGTGGGGGGTGAGTGGNNNNNNNNNNNNN
NNTNNTNNNTNNNNNNNNNNNNNTTTTNTNTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTN
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTCCCCCCCCTTTNTTCCTTCCTTCCTTTC
TCTCTTTCTTTTCTCCTCTTTTTTTTTTCTTCTTTTTTTTCCTTTTTTTT
TTTTTTCTTTTTCTTTTCTCCTTTCTTTTCCTTTTCTTTTTTTTTCTTTC
TTTCCTTCTCCTTCTTCCTTTTTTTCTTTTTTCTTCTTTCCTTCTTCTTT
TTCTTTTTTTTTCCTCTCTTCTTCTTCTCTTTTTTTTTCTTTTTCCTTCT
TCCTCTCTTTTTCTTTCCTTCTCTTTTTTTCTTTTCTCCTCCCCTCTCTC
CTTTCCTCCTTTTTCTTCTTCTTTCTCTTCCTCCTTCCTTCTTTCTCCCC
CTTTTCTCTTCCCCTCTTTCTTTTTTTTTTTCTTCCTCTCCTCTTCTTTT
TCTTTCTCCTCCCTTCCTCTTCTCCTCTCTTCTTTTTCCTTCTTTCTCTT
TCCTTTTTCTTTTTCCTTCTTTTTTCTTTTCTCTTCCTTCTCTTTCTTTT
TTCTTCTTCTTTTCCCCTTTTTTTTTCTTTTCTCTTTTTTCTCTTTTTCT
CTCCTCCTTCTTTCTTTCTCTTCTTCTTTTTCCTCTTTTCTTTTCTTCCT
TCTTTCCTCTTCTTCTTCCTNTTCTTCTTTTTTTTTTTTTTTCTTCTTTC
TCCTTTTTCTTCTCCTCTCCTTTCTTTTTTNTCTTTTTTTCTCTCCCCCC
TCCTTTTCTTTTCTTTNTCTTTCACCTCTTTCTTCTTTCTCTTTTTCATT
CCTTTTTTTTCTTCTTTTTCTATTCTCTCTCCTTCCTTCTTTCTTCTATT
TTCTTCCTTTTTCTTTCTTTTCCTTTCTCTCTCCTCTTATTATTTTTCTT
TCTCTCTTCTCTTCTCTCANTCTTTCCTTCTCTTTTTCCTTTTATCCTCT
TCCTCTTACATTCTTCTTCATTCTTTACTCTCACTTTTN
NNNCCGGATTTTNNNNNACTGCATGGCAGCCXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAGCCAGGATGTAT
ATATAAAGTAGGATATAAAATCCCACGTTTGTTTTAATTGCTCCAGCAGA
AATGACATGCTCAGTAGAGGGGCTGATGAAACAAGAAGCTAACACTGGTA
AATGCTGAAGCTAAGTAAAGGGCACAAGAACTCCATTTTTTTCCCTGTAT
TTTTACGCTTGAAAGACTACACAACAATGACTTTCTATTTAAAAAGAAGA
AAGCCGGACACGACAGCACAGCCCTGTAATCCCAGCACCTGGGAGGTTGA
GGGTACGGAATCAAAACCACACGTGACTACGTAGTTTGAAGAGGATTGCA
GTCATCTTGGGCTATCTGAGATCTTGGCTCAAAACAAAACACATGGTGAT
TGCCAAGCAAGTGTTCTCTTTCGCTCTGCACTCTCCTCCTGTACTTTCAA
CCAAGTTTAATGTGCTGGCAGCATAGCGTTGCCTTCCTCCTAAGTCTCCA
GGTGAGAGCTGAATACCTGTTGGGCAGCAGCTCTCCTAAGCCTCTGCCAT
GCCTGGCCAATCCATCTGCTCCAAACTGACCTACGTCCTTACATTAAAAC
CGGACCACTGTCTGCTGTCTCAAACTGGCCACTGCTGTCTCCCAACCACT
TAAGGCTGAGAAACCACCCTGTCAGGTTTTTTTTTCTTTTAATTTCCCTT
TCCAGCCTCTAAGGATGTTCATTAAATTTTTTCCTGGAATAACTAATTCC
AAAATTGACTGGATTAACCTTATGGGATAATATTATGTTTGTAATCCCTC
TCTTTTCCAAACATACGTCATTTTTATGATACTCCTTTCCCTGGATTTGT
TAAAACCCTCCTTTATCTTCCCCTCTGCTTTGCCATAAAAATCCTGTTCT
TCCACTACCTTTTGAATCCCCTGTTTTTTTTCTTTCTATTGTATACAAAT
GTCTAACTTGGTCTACATTTTTCTTCAATTTACGCTCTTGCTTCCTTAAT
TTCCTTTGGTGCTTTGCTTATTAAAAAAATACCTCTTTAGTTCCCCTTGT
TATGATTCTTTTCTTATAAATTTGAATTCCCTGCCATCCCTATTTATCCT
TTATAAAAATCTACTCTCTTTCTTTCTTTCTATATGTCCCCTCATTTCTT
CTTTATTTGTACTTCATATATTGACTTCCAATACTACTTCTTTTATATTA
ATATCTTATCTCACTCTCCTCTTTCTCCCGCTTATGCATAATATTGTGTC
ATCCTCATTTCCTGTCTCAAATCGCTCTCACTCCTCTTACTTTTCTTTTT
TATGCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no107_b14.g1 MSMg01no107_b14.g1 CHROMAT_FILE:
MSMg01no107_b14.g1 PHD_FILE: MSMg01no107_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:29 2005
         (498 letters)



>mm_chr19_38660632_38661529
          Length = 898

 Score =  654 bits (338), Expect = 0.0
 Identities = 381/396 (96%), Gaps = 4/396 (1%)
 Strand = Plus / Minus

                                                                       
Query: 104 tttttccctgtatttttacgcttgaaagactacacaacaatgactttctatttaaaaaga 163
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 898 ttttt--ctgtatttttacgcttgaaagactacacaacaatgactttctatttaaaagga 841

                                                                       
Query: 164 agaaagccggacacgacagcacagccctgtaatcccagcacctgggaggttgagggtacg 223
           | |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 840 acaaagccgggcacgacagcacagccctgtaattccagcacctgggaggttgagggtacg 781

                                                                       
Query: 224 gaatcaaaaccacacgtgactacgtagtttgaagaggattgcagtcatcttgggctatc- 282
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 780 gaatcaaaaccacacttgactacgtagtttgaagaggattgcagtcatcttgggcta-ca 722

                                                                       
Query: 283 tgagatcttggctcaaaacaaaacacatggtgattgccaagcaagtgttctctttcgctc 342
           |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct: 721 tgagatcttggctcaaaacaaaacacatggtgatcgccaagcaagtcttctcttttgctc 662

                                                                       
Query: 343 tgcactctcctcctgtactttcaaccaagtttaatgtgctggcagcatagcgttgccttc 402
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tgtactctcctcctgtactttcaaccaagtttaatgtgctggcagcatagcgttgccttc 602

                                                                       
Query: 403 ctcctaagtctccaggtgagagctgaatacctgttgggcagcagctctcctaagcctctg 462
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 601 ctcctaagtctccaggtgagagctgaatagctgttgggcagcagctctcctaagtctctg 542

                                               
Query: 463 ccatgcctggccaatccatctgctccaaactgacct 498
           ||||||||||||||||||||||||||||||||||||
Sbjct: 541 ccatgcctggccaatccatctgctccaaactgacct 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)