Query= MSMg01no108_k11.b1 MSMg01no108_k11.b1 CHROMAT_FILE:
MSMg01no108_k11.b1 PHD_FILE: MSMg01no108_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:35 2005
(450 letters)
>mm_chr19_46980838_46981687
Length = 850
Score = 553 bits (286), Expect = e-162
Identities = 322/334 (96%), Gaps = 2/334 (0%)
Strand = Plus / Minus
Query: 4 ggaattctgtgttgtagccttcagggttta-ttttttgttttgagggatcatagtatagg 62
|||||||||||||| || |||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 333 ggaattctgtgttgaaggcttcagggtttatttttttgttttgagggatcatagtataag 274
Query: 63 tagagaggctaaagtacaagttatggggggcggggggaagaagtctagctgcttttgaaa 122
|||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 273 tagagaggctaaagtagaagttatgggggg-gggggggagaagtctagctgcttttgaaa 215
Query: 123 atatccagagtagctgagaatggtgacatacttctttaatcccagtactcaggagggata 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atatccagagtagctgagaatggtgacatacttctttaatcccagtactcaggagggata 155
Query: 183 ggcaggcggctgtccttgagtttgaggccagtcttgtcttcagagtgagttccagaacag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 ggcaggcggctgtccttgagtttgaggccagtcttgtcttcagagtgagttccagaacag 95
Query: 243 ccagggctacacagagaaaacttgtcttaaaaaaccttataagaaaagaacatatccaga 302
|||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||
Sbjct: 94 ccagggctacacagagaaaacttgtcttgaaaaaccaaaaaagaaaagaacatatccaga 35
Query: 303 gttaatgttagggaagaccagcagctagaggaag 336
|||||||||||||||||||||||||| |||||||
Sbjct: 34 gttaatgttagggaagaccagcagctggaggaag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space: 369600
Effective search space used: 369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_k11.g1 MSMg01no108_k11.g1 CHROMAT_FILE:
MSMg01no108_k11.g1 PHD_FILE: MSMg01no108_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:35 2005
(552 letters)
>mm_chr19_46829177_46830128
Length = 952
Score = 998 bits (516), Expect = 0.0
Identities = 541/556 (97%), Gaps = 12/556 (2%)
Strand = Plus / Plus
Query: 1 agacttttccaagagaaactgtaaatggtattttaaattttgaaatattatttagtggtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacttttccaagagaaactgtaaatggtattttaaattttgaaatattatttagtggtc 260
Query: 61 accttctcatcactcgggggtgtctcgaagtaagtacaactgactggtcagtcagtgtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accttctcatcactcgggggtgtctcgaagtaagtacaactgactggtcagtcagtgtct 320
Query: 121 tacatttggaatcttcgtccaggattggaggagacccccccttcccctgaccaccaactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacatttggaatcttcgtccaggattggaggagacccccccttcccctgaccaccaactt 380
Query: 181 gactgataggagtggagaaagacgtcagcaacaggcacctacttggatgctagaggcccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gactgataggagtggagaaagacgtcagcaacaggcacctacttggatgctagagg---- 436
Query: 241 tcacc----gcttccagactggtaactgggtctaggtaagggcacatcgggcacagtcgc 296
| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ----cggtggcttcaagactggtaactgggtctaggtaagggcacatcgggcacagtcgc 492
Query: 297 tggaaccccagtggaagggacccttcctgtcgctgctagccactcccatagccctcaagg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tggaaccccagtggaagggacccttcctgtcgctgctagccactcccatagccctcaagg 552
Query: 357 tggacagtattgtggcctgggtgcacgcttcccaggagaaacctgcaggtgccctgctct 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tggacagtattgtggcctgggtgcacgcttcccaggagaaacctgcaggtgccctgctct 612
Query: 417 ctggggacccctgctggacaggacataagatgggcaatcggctcaagatcaagatcactc 476
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 613 ctggggacccctgctggacaggacagaagatgggcaatcggctcaagatcaagatcactc 672
Query: 477 aaccttgatcatgaccgcctggtggtacctttagattctggttccttcccccattctatg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 aaccttgatcatgaccgcctggtggtacctttagattctggttccttcccccattctatg 732
Query: 537 tgcacatctgccaaac 552
|||||||| |||||||
Sbjct: 733 tgcacatccgccaaac 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
