Query= MSMg01no108_p15.b1 MSMg01no108_p15.b1 CHROMAT_FILE:
MSMg01no108_p15.b1 PHD_FILE: MSMg01no108_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:00 2005
(400 letters)
>mm_chr19_54762597_54763398
Length = 802
Score = 677 bits (350), Expect = 0.0
Identities = 389/402 (96%), Gaps = 2/402 (0%)
Strand = Plus / Plus
Query: 1 aaagctggtaataaatttccctcagac-acatattattgagaaaaataaattcttccctt 59
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 aaagctggtaataaatttccctcagacaacatattattgagaaaaataaattcttccctt 260
Query: 60 tac-acatcactatgtgtgctcaactttcaatagctgggggcaactaagttcagggagat 118
||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 261 tacaacatcactatgtgtgctcagccttcaatagctgggggcaactaagttcagggagat 320
Query: 119 tgctgaacagcgcgctccctcagagactgattctgaacttctgtagtggggttccagaaa 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctgaacagcgcgctccctcagagactgattctgaacttctgtagtggggttccagaaa 380
Query: 179 gctacatttaagcaaatggctcttgtggttcacacaggaacctaagagagtcactgcata 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctacatttaagcaaatggctcttgtggttcacacaggaacctaagagagtcactgcata 440
Query: 239 tgtctggttctctggggaaattaaattcaccaagcttagtatatgtcttcaattctactg 298
| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 gggctggttctctggggaaattaaattcaccaagcttagcatatgtcttcaattctactg 500
Query: 299 cccagcaccccagggtttgctagtctcaactgatatacgcgtagccatggtaaatctcac 358
||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||
Sbjct: 501 cccagcaccccagggtttgctagtctcaactgatatatgcatagccatggcaaatctcac 560
Query: 359 ctatgattttctatgactgttaacactactcagagctcccta 400
|||||| ||||||||||||| |||||| ||||||||||||||
Sbjct: 561 ctatgagtttctatgactgtaaacactgctcagagctcccta 602
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 802
Length adjustment: 9
Effective length of query: 391
Effective length of database: 793
Effective search space: 310063
Effective search space used: 310063
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_p15.g1 MSMg01no108_p15.g1 CHROMAT_FILE:
MSMg01no108_p15.g1 PHD_FILE: MSMg01no108_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:00 2005
(559 letters)
>mm_chr19_54908140_54909097
Length = 958
Score = 1004 bits (519), Expect = 0.0
Identities = 546/555 (98%), Gaps = 1/555 (0%)
Strand = Plus / Minus
Query: 5 tgaatagatagttccctgctgtttctttcttcaacatggagaaaatacaggcagtgatat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tgaatagatagttccctgctgtttctttcttcaacatggagaaaatacaggcagtgatat 699
Query: 65 tattaagagtcctttgtaggaagattaaagtaaacatggcagagggcctcctgttatctg 124
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 698 tattaagagtcctttgtaggaagattaaagtaaacatggctgagggcctcctgttatctg 639
Query: 125 tactttgacccccgatttcttcctaatattctccctcaaatctcttgttttctttcctgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tactttgacccccgatttcttcctaatattctccctcaaatctcttgttttctttcctgt 579
Query: 185 cttgaaacttagctaattgaaaactgttaaatttgacaaaacagctgtcgaaagggatgt 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 578 cttgaaacttagctaattgaaaactgttaaatttgacaaaacagctgtcgaaagtgatgt 519
Query: 245 cctgacagaggaatgtcactgtgccccccccatgcccagtgagaagaacgaacatgagaa 304
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 518 cctgacagaggaatgtcactgtg-tccccccatgcccagtgagaagaacgaacatgagaa 460
Query: 305 ccaatctctcactgttgcagaggaaagttttgcagtagccaaggacaaagtgtttctgag 364
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 459 caaatctctcactgttgcagaggaaagttttgcagtagccaaggacaaagtgtgtctgag 400
Query: 365 tccaattacaggtaagtctctctctttttacctttaaaacctcagccctgctttggctta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tccaattacaggtaagtctctctctttttacctttaaaacctcagccctgctttggctta 340
Query: 425 tagatgatggagtcccaggtaccctctagtatgtatcagctagataaagcctttgtttaa 484
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 339 tagatgatggagtcccaggtaccctctagtatgcatcagctagataaagcctttgtttaa 280
Query: 485 gccacttccaccattttctttttataatagagaccatcaactctactactttgtagaaat 544
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 279 gccacttccaccattttctttttataatagagaccatcaactctactacttagtagaaat 220
Query: 545 cttccctcagttcta 559
||||||||| |||||
Sbjct: 219 cttccctcaattcta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 958
Length adjustment: 10
Effective length of query: 549
Effective length of database: 948
Effective search space: 520452
Effective search space used: 520452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
