BAC Information

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BAC

Clone NameMSMg01-110L24
Chromosome19 (Build37)
Map Location 25,507,489 - 25,663,313
singlet/doubletdoublet
Overlap geneAnkrd15, LOC383474, Dmrt1
Upstream genePip5k1b, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, LOC433233
Downstream geneDmrt3, Dmrt2, EG667806, 1700048O14Rik, LOC100041846, LOC100041857
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110L24.T7 (MSMg01no110_l24.b1)MSMg01-110L24.TJ (MSMg01no110_l24.g1)
ACCAG323597AG323598
length706702
length of high quality
(start - end)
597 (43 - 639)438 (72 - 509)
definitionCHROMAT_FILE: MSMg01no110_l24.b1 PHD_FILE: MSMg01no110_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:26 2005CHROMAT_FILE: MSMg01no110_l24.g1 PHD_FILE: MSMg01no110_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,507,489 - 25,508,082)(25,662,876 - 25,663,313)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCAGGCTGGCAGGCCCCTTCCCAGGGGAATGAACAGGCCACAGAGGTC
TCATGTTGATTCTGAAAATGGGGTTTTTAATCCCAGAGCTTAAATCTTCA
TCATTTCTACCCCATGCCAGGATAGGCTGGATCTCAGTCATCCGTGGGGG
ACAGCATCTCTTCACGAGGAGCTAATTCTAAGTATAGTGACCCAAATAGC
ACAGGTTGAGCTCATGGCTACATGTCACTGTGTCCCTGACACTGTTCCTA
AAGCTGTCAGGAGGCTGCTCCTCATCTCAGAATTTACTCCGAGTAGGAGG
AGGCTGACTTCCGAGGACAGCTGGACAATCCCTGCTTAGCCTGGCTGGCT
TTAGAACATGCCCGCAGAGGGTGGACATCTGTCCCACATTCTCAGGAAGA
GCTCGCCTGGCTCCGGCACACAGATGGTTGTCAGCTGTGACTAACCAATG
TCTGGGGGAACACATCTGCCTGAAGTCACTCATTAACCTCCATTTTCCCC
CCTTTCCTGGTCTCTAGAGCACCCCGAGGCTTGGCAGAAAGACATCTCCT
GGTCCCACTCACCGAGGTTCTTTTGACTGATTATGTAAGCATGGCCCTTG
TGTGTACCACCACGAAGCTGCTAGTTATTCCTGTCGGGTTGACAGATACT
GAATGT
TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCATGCTGTCCAGCCCTGTAATGAGGGTT
TGAGGCTCTAATTAGGTATTTGCTGGAGAAATGAAGGCAATGATTACAAC
TATTTCCACACTGAGATAGTACTAGTTATAACACTGGTCTAGATAAAACT
TAGAAGAAAAAGCTGCAGATATCAGTAGGAATTAACTAGTGCACTTGATA
TTTAAGGGGAGAATATTTTAATGTTAAATTTATTTATTTAAAATAATTAT
TTCTGACGGTGAAGAGGAAAGCTGACTGCCAAAGATCTGAGACAAAGTCG
ACAACAGGTATAGGTAAAAACCAACATGTATACCTAAATAAAATCACCTT
TAAGAATAAAATTTACACATTTAAGTCTTAATTTTATATAAATACATATT
ATTTATTTAAAAACGCACCTGGAACTGTTTATGTCACAACAAATAACCAA
ATAACAAAGAATAAAGAATTATTATTATTTTAGTAATAAAAAAGCAATAT
TCATTAAGACAGCAAGCAGAGGACCCAGCCTGCTGCTCCGGTCACCGCGC
TCCTCCATGGAAGTGCCTCACTGGACCCGTGTGAGTGAAAGGCTTCTTTA
CTGAACACATCTGGAACGCACTAGTATCCTGATACCTGATCCTGTGCACA
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_l24.b1 MSMg01no110_l24.b1 CHROMAT_FILE:
MSMg01no110_l24.b1 PHD_FILE: MSMg01no110_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:26 2005
         (597 letters)



>mm_chr19_25507286_25508282
          Length = 997

 Score = 1102 bits (570), Expect = 0.0
 Identities = 588/594 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcccaggctggcaggccccttcccaggggaatgaacaggccacagaggtctcatg 63
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 204 ggaattcccaggctggcaggccccttcccaggggaatgaacaggccacaggggtctcatg 263

                                                                       
Query: 64  ttgattctgaaaatggggtttttaatcccagagcttaaatcttcatcatttctaccccat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgattctgaaaatggggtttttaatcccagagcttaaatcttcatcatttctaccccat 323

                                                                       
Query: 124 gccaggataggctggatctcagtcatccgtgggggacagcatctcttcacgaggagctaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 324 gccaggataggctggatctcagtcatccgtgggggacagcatctcttcaggaggagctaa 383

                                                                       
Query: 184 ttctaagtatagtgacccaaatagcacaggttgagctcatggctacatgtcactgtgtcc 243
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 384 ttctaagtatagtgacccaaatagtacaggttgagctcatggctacatgtcactgtgtcc 443

                                                                       
Query: 244 ctgacactgttcctaaagctgtcaggaggctgctcctcatctcagaatttactccgagta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgacactgttcctaaagctgtcaggaggctgctcctcatctcagaatttactccgagta 503

                                                                       
Query: 304 ggaggaggctgacttccgaggacagctggacaatccctgcttagcctggctggctttaga 363
           ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 504 ggaggaggctgacttccaaggacagctggacaatccctgcttagcccggctggctttaga 563

                                                                       
Query: 364 acatgcccgcagagggtggacatctgtcccacattctcaggaagagctcgcctggctccg 423
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acatgcctgcagagggtggacatctgtcccacattctcaggaagagctcgcctggctccg 623

                                                                       
Query: 424 gcacacagatggttgtcagctgtgactaaccaatgtctgggggaacacatctgcctgaag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gcacacagatggttgtcagctgtgactaaccaatgtctgggggaacacatctgcctgaag 683

                                                                       
Query: 484 tcactcattaacctccattttcccccctttcctggtctctagagcaccccgaggcttggc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcactcattaacctccattttcccccctttcctggtctctagagcaccccgaggcttggc 743

                                                                 
Query: 544 agaaagacatctcctggtcccactcaccgaggttcttttgactgattatgtaag 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agaaagacatctcctggtcccactcaccgaggttcttttgactgattatgtaag 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no110_l24.g1 MSMg01no110_l24.g1 CHROMAT_FILE:
MSMg01no110_l24.g1 PHD_FILE: MSMg01no110_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:26 2005
         (438 letters)



>mm_chr19_25662527_25663364
          Length = 838

 Score =  824 bits (426), Expect = 0.0
 Identities = 435/438 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatgctgtccagccctgtaatgagggtttgaggctctaattaggtatttgctggagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tcatgctgtccagccctgtaatgagggtttgaggctctaattaggtatttgctggagaaa 728

                                                                       
Query: 61  tgaaggcaatgattacaactatttccacactgagatagtactagttataacactggtcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tgaaggcaatgattacaactatttccacactgagatagtactagttataacactggtcta 668

                                                                       
Query: 121 gataaaacttagaagaaaaagctgcagatatcagtaggaattaactagtgcacttgatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gataaaacttagaagaaaaagctgcagatatcagtaggaattaactagtgcacttgatat 608

                                                                       
Query: 181 ttaaggggagaatattttaatgttaaatttatttatttaaaataattatttctgacggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ttaaggggagaatattttaatgttaaatttatttatttaaaataattatttctgacggtg 548

                                                                       
Query: 241 aagaggaaagctgactgccaaagatctgagacaaagtcgacaacaggtataggtaaaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 aagaggaaagctgactgccaaagatctgagacaaagtcgacaacaggtataggtaaaaac 488

                                                                       
Query: 301 caacatgtatacctaaataaaatcacctttaagaataaaatttacacatttaagtcttaa 360
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 487 caacatgtatacctaaataaaatcacctttaagaataaaatttaaatatttaagtcttaa 428

                                                                       
Query: 361 ttttatataaatacatattatttatttaaaaacgcacctggaactgtttatgtcacaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 427 ttttatataaatacatattatttatttaaaaacgcacctggaactgtttatgtcaaaaca 368

                             
Query: 421 aataaccaaataacaaag 438
           ||||||||||||||||||
Sbjct: 367 aataaccaaataacaaag 350


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)