Query= MSMg01no111_l05.b1 MSMg01no111_l05.b1 CHROMAT_FILE:
MSMg01no111_l05.b1 PHD_FILE: MSMg01no111_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:21 2005
(264 letters)
>mm_chr19_32624086_32624749
Length = 664
Score = 464 bits (240), Expect = e-135
Identities = 255/260 (98%)
Strand = Plus / Minus
Query: 1 cttaaagtaatacagtcaggtggaggtaaaagccaggagacaacagaaaacttcaagtta 60
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 460 cttaaagtaatacaatcaggtggaggtaaaagccaggagacaacagaaagcttcaagtta 401
Query: 61 aaaaggatgctacgacactagaaaattaatagatgaaattagtagcagctcccacacggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aaaaggatgctacgacactagaaaattaatagatgaaattagtagcagctcccacacggt 341
Query: 121 tggaggctggataattaactggctagtaaaaaattagctcctaggatacagctggaaggg 180
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 340 tggaggctggataattaactggccagtaaaaaattagctcctagaatacagctggaaggg 281
Query: 181 aatgaaaatacaaacacaaacatacccatagaggcatcacatcaaatcccatgtgagaga 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aatgaaaatacaaacacaagcatacccatagaggcatcacatcaaatcccatgtgagaga 221
Query: 241 gaaagctatgggaaggaaaa 260
||||||||||||||||||||
Sbjct: 220 gaaagctatgggaaggaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space: 167025
Effective search space used: 167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no111_l05.g1 MSMg01no111_l05.g1 CHROMAT_FILE:
MSMg01no111_l05.g1 PHD_FILE: MSMg01no111_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:21 2005
(648 letters)
>mm_chr19_32546581_32547627
Length = 1047
Score = 1191 bits (616), Expect = 0.0
Identities = 640/648 (98%), Gaps = 1/648 (0%)
Strand = Plus / Plus
Query: 1 ttgccattgtgtgaaccctttcagactcagtttccttctccccactgccttctcttggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgccattgtgtgaaccctttcagactcagtttccttctccccactgccttctcttggag 260
Query: 61 ctggacctgaatttgttaccagttttgttttttttttaatccactgtaggataggacaat 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 ctggacctgaatttgttaccagtttt-ttttttttttaatccactgtaggataggacaat 319
Query: 121 tttacttttgtttcttggtcaggaatcgcttgattctgaaagtcatatgagaagacatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tttacttttgtttcttggtcaggaatcgcttgattctgaaagtcatatgagaagacatgg 379
Query: 181 tgagaagctgaatcaggtatagggcatagaatggcagagcaaaggagaagaggaccagaa 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcagaagctgaatcaggtatagggcatagaatggcagagcaaaggagaagaggaccagaa 439
Query: 241 acttaaagcttaattttaaatttcaaaatggattataaaacttgaagtaaaaacaccaaa 300
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 440 acttaaagcttaattttaaatttcaaaatggagtagaaaacttgaagtaaaaacaccaaa 499
Query: 301 gttggaaatctgcaagatcaatgaagaaaataatcttaagacacagtcacaatataaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gttggaaatctgcaagatcaatgaagaaaataatcttaagacacagtcacaatataaaga 559
Query: 361 aataaaattagtgaatgaaaagttaccaaacaagaaggatagatttagcagaacttttgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aataaaattagtgaatgaaaagttaccaaacaagaaggatagatttagcagaacttttgt 619
Query: 421 gcttatttacataatacaaacactaagaattaggatccacatatgagaaaaccaggtgat 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 620 gcttatttacataatacaaacactaagaattaggatccacatatgaaaaaaccagatgat 679
Query: 481 tttgtctgacacagaaaattcaaagaatgaaaacctatatatcaagtaaacaggtacagg 540
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tttgtctgagacagaaaattcaaagaatgaaaacctatatatcaagtaaacaggtacagg 739
Query: 541 aagtagacaagagtagccattatcatacttgacaaagttgacttcaagcaaaatgaagtt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aagtagacaagagtagccattatcatacttgacaaagttgacttcaagcaaaatgaagtt 799
Query: 601 gaaggataaaggccagtacattcaataaaggaaagaatccatcgatag 648
||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 800 gaaggataaaggccagtacattcaataaaggaaagaatccatcaatag 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1047
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1037
Effective search space: 661606
Effective search space used: 661606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
