Query= MSMg01no112_d01.b1 MSMg01no112_d01.b1 CHROMAT_FILE:
MSMg01no112_d01.b1 PHD_FILE: MSMg01no112_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:16 2005
(602 letters)
>mm_chr19_19257802_19258806
Length = 1005
Score = 1081 bits (559), Expect = 0.0
Identities = 587/599 (97%), Gaps = 8/599 (1%)
Strand = Plus / Plus
Query: 8 gaattcctcaaactcagctattccatgccctttcactcaccatcttctt---atttttca 64
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 208 gaattcctcaaactcagctattccatgccctttcactcaccatcttcttcttatttttca 267
Query: 65 ttgcttgtcatgttctttttggtgtgtgtataacttgacttgtatattttactttcttac 124
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 268 ttgcttgtcatgttctttttggtgtgtgtgtaacttgacttgtatattttactttcttac 327
Query: 125 ctacatgtgttcttctctttcttgctcctctctttatcatactgctagcagaaattcaac 184
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctacatgtgttct---ctttcttgctcctctctttatcatactgctagcagaaattcaac 384
Query: 185 tcgaaaaactcaagtagcccaggtgctcaacttggacaattgaacaactggacatacatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcgaaaaactcaagtagcccaggtgctcaacttggacaattgaacaactggacatacatg 444
Query: 245 gagaaaatacgtgcatggagatatatgtcattggtgtctccttaaatccatgacttcatc 304
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 445 gagaaaatacgtgcatggagatatatgtcattggtgtc-ccttaaatccatgacttcatc 503
Query: 305 cacgattagtccttatgctggttggcaagtttactttacttcttctaacacaattctgtg 364
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 504 cacgattagtccttatgctggttggcaagtttacttcacttcttctaacacaattctgtg 563
Query: 365 tcctaaatgaccactcccctctctttctttacacactactcacttttccctactttcttc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcctaaatgaccactcccctctctttctttacacactactcacttttccctactttcttc 623
Query: 425 attttcaaactactgtctctattcctggtttcagccctgaaataattcctacagggcacc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 attttcaaactactgtctctattcctggtttcagccctgaaataattcctacagggcacc 683
Query: 485 attgccagaaaaagtttttttaaaaaatttttt-attaggtattttcttcatttccattt 543
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 684 attgccagaaaaagtttttttttaaaatttttttattaggtattttcttcatttccattt 743
Query: 544 ccaatgctatcccaaaagtcccctgtaccccccacccccccactcccctacccacacac 602
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ccaatgctatcccaaaagtcccctgtaccccccacccccccactcccctacccacacac 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1005
Length adjustment: 10
Effective length of query: 592
Effective length of database: 995
Effective search space: 589040
Effective search space used: 589040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no112_d01.g1 MSMg01no112_d01.g1 CHROMAT_FILE:
MSMg01no112_d01.g1 PHD_FILE: MSMg01no112_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:16 2005
(496 letters)
>mm_chr19_19417092_19417987
Length = 896
Score = 886 bits (458), Expect = 0.0
Identities = 488/500 (97%), Gaps = 6/500 (1%)
Strand = Plus / Minus
Query: 1 ttttccccaaactgtcaaaacacctcccagaaatttcacagcccaactcaaataccactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ttttccccaaactgtcaaaacacctcccagaaatttcacagcccaactcaaataccactg 540
Query: 61 acacctaaatatttgtctccccttaaccttgcatattttgtttgttctactctagtacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 acacctaaatatttgtctccccttaaccttgcatattttgtttgttctactctagtacca 480
Query: 121 ttaatgtaaattgtgatctggaacacttccttatatttttttcctctttcaacctatgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttaatgtaaattgtgatctggaacacttccttatatttttttcctctttcaacctatgaa 420
Query: 181 ctataaaattgattaaaaagaataacgccttacctgtttttaataaaattcaaaactaag 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 419 ctataaaattgattaaaaagaataacgccttacctgtttttaataaaattcaaagctaag 360
Query: 241 aacaggaattttaaagacaatccctgctcttacacaatatgttgattggaagaagaaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aacaggaattttaaagacaatccctgctcttacacaatatgttgattggaagaagaaata 300
Query: 301 acttttaaaaaagttcagaagaggtgctagacctggtgatgcacatgggagcacaaagca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 acttttaaaaaagttcagaagaggtgctagacctggtgatgcacatgggagcacaaagca 240
Query: 361 aggcagttgtgggtttgagatggacctgggctccatgagagagagagagagagagagaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aggcagttgtgggtttgagatggacctgggctccatgagagagagagagagagagagaga 180
Query: 421 ga--cagagacagagacactgacacagacacagacacagacacagacacagacacagaca 478
|| |||||||||||||| |||||||||||||||| ||||||||||| ||| | ||||
Sbjct: 179 gagacagagacagagacagagacacagacacagacagagacacagacagagaga--gaca 122
Query: 479 gagagagacaga--cagaga 496
|||||||||||| ||||||
Sbjct: 121 gagagagacagagacagaga 102
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
