Query= MSMg01no112_m14.b1 MSMg01no112_m14.b1 CHROMAT_FILE:
MSMg01no112_m14.b1 PHD_FILE: MSMg01no112_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:03 2005
(423 letters)
>mm_chr19_33367032_33367852
Length = 821
Score = 698 bits (361), Expect = 0.0
Identities = 376/381 (98%), Gaps = 4/381 (1%)
Strand = Plus / Minus
Query: 1 tcaaaaagtatatgtacttttaaaagtcctgatgcatgaaa-atataatttttttcagaa 59
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 578 tcaaaaagtatatgtacttttaaaagtcctgatgcat-aaatatataatttttttcagaa 520
Query: 60 agttatcaaagttaaaaaaaaatgcttggcagtatacttttctcagctgggtgttcacct 119
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 agttatcaaagtt-aaaaaaaatgcttggcagtatacttttctcagctgggtgttcacct 461
Query: 120 aagttttgagataattcctatccctacatattgggatacagttagtggactgaacagcca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aagttttgagataattcctatccctacatattgggatacagttagtggactgaacagcca 401
Query: 180 aactagcctctttaatcttacgtgtttcagttacttaaacagtctttgcttatccttatc 239
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 400 aactagcctctttaatcttacgtgtttcagttacttaaatagtctttgcttatccttatc 341
Query: 240 ttccaaatagaatggtcttctctcagtttttctgtatggaaccatctgcattatctttta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ttccaaatagaatggtcttctctcagtttttctgtatggaaccatctgcattatctttta 281
Query: 300 gagtacactagaaataaaatatcatgttgaaacgatctttagccctggtttttcgtaatg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gagtacactagaaataaaatatcatgttgaaacgatctttagccctggtttttcgtaatg 221
Query: 360 ctgaatcaatttaaaattttt 380
||||||||||| |||||||||
Sbjct: 220 ctgaatcaatt-aaaattttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 821
Length adjustment: 9
Effective length of query: 414
Effective length of database: 812
Effective search space: 336168
Effective search space used: 336168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no112_m14.g1 MSMg01no112_m14.g1 CHROMAT_FILE:
MSMg01no112_m14.g1 PHD_FILE: MSMg01no112_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:03 2005
(386 letters)
>mm_chr19_33188411_33189193
Length = 783
Score = 700 bits (362), Expect = 0.0
Identities = 379/386 (98%), Gaps = 3/386 (0%)
Strand = Plus / Plus
Query: 1 actaaaccccaacctcctgttgaattgaggttgagacgaatgcagaggctgtacattgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaaaccccaacctcctgttgaattgaggttgagacgaatgcagaggctgtacattgga 260
Query: 61 caaagcttgatctggtgacatggaggctgtaggctccttgaaaacaggcaggtagccact 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 caaagcttgatctggtgacatggaggctggaggctccttgaaaacaggcaggtagccact 320
Query: 121 ataccttggaggctactttgctcctttaataacatcttgtgatcagaaatgaatgtaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataccttggaggctactttgctcctttaataacatcttgtgatcagaaatgaatgtaatt 380
Query: 181 ctgaaaatttaaacttcagcatcagtatttcactggcaacctcttgggcaaagttgaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgaaaatttaaacttcagcatcagtatttcactggcaacctcttgggcaaagttgaaat 440
Query: 241 gctcttcacaattccccatacttaaatctccagcagtgttttctttgtttttggaaaaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctcttcacaattccccatacttaaatctccagcagtgttttctttgtttttggaaaaca 500
Query: 301 acaaaattaaaattatccaagaatcgtttttttttttcttcaaaaacacatattttacgc 360
|||||||||||||||||| |||||| |||||||| |||||||||||||||||||| ||
Sbjct: 501 acaaaattaaaattatcctagaatcatttttttt---cttcaaaaacacatattttaggc 557
Query: 361 ctgtgttgagactcagactgaaatgg 386
||||||||||||||||||||||||||
Sbjct: 558 ctgtgttgagactcagactgaaatgg 583
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 783
Length adjustment: 9
Effective length of query: 377
Effective length of database: 774
Effective search space: 291798
Effective search space used: 291798
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
