BAC Information

Click to search

BAC

Clone NameMSMg01-112O09
Chromosome19 (Build37)
Map Location 51,866,325 - 51,866,677
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042924, LOC100042928
Downstream geneLOC668536, LOC100042936, Ins1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112O09.T7 (MSMg01no112_o09.b1)MSMg01-112O09.TJ (MSMg01no112_o09.g1)
ACCAG325188AG325189
length746732
length of high quality
(start - end)
179 (128 - 306)353 (77 - 429)
definitionCHROMAT_FILE: MSMg01no112_o09.b1 PHD_FILE: MSMg01no112_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:11 2005CHROMAT_FILE: MSMg01no112_o09.g1 PHD_FILE: MSMg01no112_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAACTGATTCCACACAAAGTGCTGGGAAGCACTTGAAAAAATATT
CAACATCCTTAATCATCATGGACCCCAAATCAAAACATCCCTGTGATACC
ACCTCACACAAGTCAGAATGCCTAGGAACAAAAATTCAGGTGACAGCAGA
TGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGA
TTGCAAGCTGCGACAACTCTGTAAATCAGTCTGGCGGGGTTTTTTTGTTT
TTGTTTTGCTTTGTCTTGTTTTGTTTTTGTTTTTGTTTTTGTTTTTTTGT
TTTTTCAGATTTTTTTTCATCCCCCCACTGCCAGATGCAGCAATACCTCT
CCTGGTTATATATTCCCCCAAGATGAACAAACCCGCCATTCGAGCGCGTG
CTCTACTTCTTTCATATCAGCCTTATTTATAATAGCCAGAAGCTGAAAAG
AACCCATATCCCCTTCTATAAATGAATGCATATTTAAAATGTGGCACTAC
TACACAATGTATTTACCACTTATCCATCACATCAATGCCCCTCACGATTT
TCTTGCCGCTCTTGTATTCATCTTTGCGGATATCATCTCTGATCGCCGGT
ACTCTTATTCCCATTTTAATTCCTCCGCGCCTCCTTTTCACCTGTATCCC
TGTCACCTTTATTTTTTTAACCCCTTTATCCTTCCCTTACTCCCCC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAAGCATGATTGCATACATATAT
CTTTGGAAATTAGCTTGAACATTTTGGTGTCCATATTCTGAAGTCACGTG
ACGATCATACCCCAAGTTATATATGTAAGTGTTTGAGGTGCCTCCATACT
CATTTACATAATGATTGGATAATTTGCATTCCTATCTGTAGAGAATCTAT
AAATACAGGTTCTTCTTGCCAAGTATCATTAACAATTGTTCTTAGTTTCT
TTTTATTTTTGCATTTAATTCATTTTTTTCTTTTTCATATTTTAGTTTTT
TGATAAATTCATGCATGTGTTTTGATTATATTTACCTTACCCAATTTCTT
ACAAATCTACCTCCTCCCTTCTACGCCCACCCAACATTGCATTGTCTGTT
TTGCTTTTGACCCATCAAATCTAATTTATGATGTCTATTCATTCTTGGAT
TTATGACCTCCCAGGATAGCCTTGTTGACCTACCACGCGCTATACCCCCA
AAGTAAACAATCCCTTTCTTGAGGAACTACCCTTCCTCAGTAGCTCCCAT
GCTAAAAGTTCAGGAGAATTTCAAGGGTAGTCCTCTATACAAGCTGAGAA
TCTTCCACGCATAAGCTTATCTATGCTGTTATAATACTTTGATTTAAAAT
GGGTTACTTTCCTTCAGTGGTTAAAAGACACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_o09.g1 MSMg01no112_o09.g1 CHROMAT_FILE:
MSMg01no112_o09.g1 PHD_FILE: MSMg01no112_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:11 2005
         (353 letters)



>mm_chr19_51865965_51866717
          Length = 753

 Score =  667 bits (345), Expect = 0.0
 Identities = 351/353 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaagcatgattgcatacatatatctttggaaattagcttgaacattttggtgtccatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ttaagcatgattgcatacatatatctttggaaattagcttgaacattttggtgtccatat 654

                                                                       
Query: 61  tctgaagtcacgtgacgatcataccccaagttatatatgtaagtgtttgaggtgcctcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tctgaagtcacgtgacgatcataccccaagttatatatgtaagtgtttgaggtgcctcca 594

                                                                       
Query: 121 tactcatttacataatgattggataatttgcattcctatctgtagagaatctataaatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tactcatttacataatgattggataatttgcattcctatctgtagagaatctataaatac 534

                                                                       
Query: 181 aggttcttcttgccaagtatcattaacaattgttcttagtttctttttatttttgcattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 533 aggttcttcttgccaagtatcattaacaattgttcttagtttctttttatttttgtattt 474

                                                                       
Query: 241 aattcatttttttctttttcatattttagttttttgataaattcatgcatgtgttttgat 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aattcttttttttctttttcatattttagttttttgataaattcatgcatgtgttttgat 414

                                                                
Query: 301 tatatttaccttacccaatttcttacaaatctacctcctcccttctacgccca 353
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tatatttaccttacccaatttcttacaaatctacctcctcccttctacgccca 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)