BAC Information

Click to search

BAC

Clone NameMSMg01-113B16
Chromosome19 (Build37)
Map Location 22,811,867 - 22,966,070
singlet/doubletdoublet
Overlap geneTrpm3
Upstream geneTmem2, EG433229, EG433230
Downstream geneKlf9, Smc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113B16.T7 (MSMg01no113_b16.b1)MSMg01-113B16.TJ (MSMg01no113_b16.g1)
ACCAG325336AG325337
length696695
length of high quality
(start - end)
108 (255 - 362)284 (224 - 507)
definitionCHROMAT_FILE: MSMg01no113_b16.b1 PHD_FILE: MSMg01no113_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:26 2005CHROMAT_FILE: MSMg01no113_b16.g1 PHD_FILE: MSMg01no113_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,811,867 - 22,811,974)(22,965,789 - 22,966,070)
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTTATACCTGGAAATTGGCTGCTTTAGAGTATCACTATCTGCA
TTTTTTTCAAACTGCAAATTTAAACTACCGGGACAATGCCAATTATTCCT
TTAGTAAATGAATATCTAGTCGAAGTCTTAGTATATATCTACAATAAAAT
CTGGAGAAGAAGAAATAATTCATTGAGCTTCAGGCAAGGACAAAACTATA
ATGGGAAAATAAGTGAACTTGTAATGTCTGATTGTAATGAGAGCTATCAA
GAAAAATAAATCAAAAAAGGGTATCTCTGAGCACTCACATGTATATTTCT
AGAGAGTCTTTTAGATTAGGTAGCTAGGTGGCCTGTAGAAGGAATGACAT
TGAAACAGGAGACCGGCTGAAGAGAGGCATGGCTGAGGGTGGAGCATTCT
GGGGACAGAATCTTGGAATCTTTGATGAAGACGTAAAAAGCTTGGCAAAG
ACTCAGATTTAATTACAAGGAATTTGCATCTAAGAAGTTAGAGATGATCA
CTACTGTGTTTTAAAACATTGCTCCACAAAGACAAATACTCTCCGTAGGA
CTACACTATTTCCTTGTCCAACACTTGAATTATTCGGCCACAATTCCAGG
CATGGACATGCTCACGACACATGGATATCATGCATAAAAGATTCGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGGGAAACTAATCTAAGAGATCTC
GGTCATTAATACTCAAACAACTCCAACTCCAAAATCCCCTTGAAGAATCA
GGCGGGACCTTACTGCTGAGGGAGGGGACAGGGAAGTGGATAAGGGACTT
GTTTCAAGGCTTAGGTTGGCTGGTGTCTGGGACTCAAAGCACGGACAAAT
GATCAGAAAGCCCCACATTCTAGCTGGGCGCAGACTAGGACGAGCCGAGG
AAATGGTATTGTATTTATCATTTTAGAGATGCTCAAAATAATTTATTGGA
CATGAGAGTCAAAAGCTCATCAAAGAGTATGTTGAATATGTGGAACCCTC
ACCGTCTGAGATTACGCCCCAGAAAAATTGAAGCCAAGACAAATTAAGCA
AAAGGGAGAATGTGTGAGGGAAATGGATTTTTTTCTGAAGGCACAGATGC
TACTGCGGCTTGGAATGGGCCAGACTCAGGAGAGCTGGGGCCTCACTCAG
GAAAGCCGTGAGAGAGTTGGGTACGCAAGCGGCACGCGGTCTGCTTCCCT
TGATTCCAAGGGTTACAGACTTCGCCCACAAATCGAGACGCTCTTTTCGT
GCGATTGTGCACAGATGGAAGAAAGGTCCGTGCCAGCGCAGGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_b16.b1 MSMg01no113_b16.b1 CHROMAT_FILE:
MSMg01no113_b16.b1 PHD_FILE: MSMg01no113_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:26 2005
         (108 letters)



>mm_chr19_22811667_22812174
          Length = 508

 Score =  194 bits (100), Expect = 2e-54
 Identities = 106/108 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaaataagtgaacttgtaatgtctgattgtaatgagagctatcaagaaaaataaatcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaaataagtgaacttgtaatgtctgattgtaatgagagctatcaagaaaaataaatcaa 260

                                                           
Query: 61  aaaagggtatctctgagcactcacatgtatatttctagagagtctttt 108
           |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 261 aaaagggtatctctgagcacacacatgtatatttctagagaatctttt 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 108
Length of database: 508
Length adjustment: 8
Effective length of query: 100
Effective length of database: 500
Effective search space:    50000
Effective search space used:    50000
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
Query= MSMg01no113_b16.g1 MSMg01no113_b16.g1 CHROMAT_FILE:
MSMg01no113_b16.g1 PHD_FILE: MSMg01no113_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:27 2005
         (284 letters)



>mm_chr19_22965589_22966272
          Length = 684

 Score =  507 bits (262), Expect = e-148
 Identities = 277/282 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtctgggactcaaagcacggacaaatgatcagaaagccccacattctagctgggcgcag 60
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||
Sbjct: 482 tgtctgggactcaaagcacagacaaatgatcagaaagccccacattctagctggacacag 423

                                                                       
Query: 61  actaggacgagccgaggaaatggtattgtatttatcattttagagatgctcaaaataatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 actaggacgagccgaggaaatggtattgtatttatcattttagagatgctcaaaataatt 363

                                                                       
Query: 121 tattggacatgagagtcaaaagctcatcaaagagtatgttgaatatgtggaaccctcacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tattggacatgagagtcaaaagctcatcaaagagtatgttgaatatgtggaaccctcacc 303

                                                                       
Query: 181 gtctgagattacgccccagaaaaattgaagccaagacaaattaagcaaaagggagaatgt 240
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gtctgagattaggtcccagaaaaattgaagccaagacaaattaagcaaaagggagaatgt 243

                                                     
Query: 241 gtgagggaaatggatttttttctgaaggcacagatgctactg 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gtgagggaaatggatttttttctgaaggcacagatgctactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)