Query= MSMg01no115_a10.b1 MSMg01no115_a10.b1 CHROMAT_FILE:
MSMg01no115_a10.b1 PHD_FILE: MSMg01no115_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:52 2005
(469 letters)
>mm_chr19_45207997_45208865
Length = 869
Score = 770 bits (398), Expect = 0.0
Identities = 449/466 (96%), Gaps = 2/466 (0%)
Strand = Plus / Minus
Query: 5 gaattcagggaaagtaggctctatgcttgaggatggagcagggtctgaccctggcccctt 64
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 577 gaattcagggaaagtaggctttatgcttgaggatggagcagggtctgaccctggccccgt 518
Query: 65 agctgcaggccactcctcaatggacagacaagcactgaagcaacgaatgcccttatccca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 517 agctgcaggccactcctcaatggacagacaagcactgaagcaacgaatgcccttacccca 458
Query: 125 ggtttcctcccgtaacactggggctcctgccccaaatctgcaagcatggagaca-aggat 183
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 457 ggtttccttccgtaacactggggctcctgccccaaatctgcaagcatggagacaca-gat 399
Query: 184 gcttcctggaactcttctctccctctcccttctttggggacagatgtggttggcgacgtc 243
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 398 gcttcccggaactcttctctccctctcccttctttggggacagatgtggttggtgacatc 339
Query: 244 ttatcatttttcctgcctgtccatcacacagaaaacctaggagcctcttcatctcttgat 303
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 338 ttatcattttccctgcctgtccatcacacagaaaacctaggagcctctttatctcttgat 279
Query: 304 gaagactgtgtgtgttgctgtattttattattatggcattggcattttcattctcatatt 363
||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 278 gaagattgtgtgtgttgctgtattttattattatggtattggcattttcattttcatatt 219
Query: 364 tatttatttattttggggtttttcgagacagggtttctctgtatagccctggctgtcctg 423
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 218 tatttatttatttttgggtttttcgagacagggtttctctgtgtagccctggctgtcctg 159
Query: 424 gaactcactttgtagaccaggctggcctcgaactcagaaatccacc 469
||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 158 gaactcactttgtagaccaggctggcctcaaactcagaaatccacc 113
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space: 394281
Effective search space used: 394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_a10.g1 MSMg01no115_a10.g1 CHROMAT_FILE:
MSMg01no115_a10.g1 PHD_FILE: MSMg01no115_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:52 2005
(625 letters)
>mm_chr19_45101450_45102474
Length = 1025
Score = 1178 bits (609), Expect = 0.0
Identities = 621/625 (99%)
Strand = Plus / Plus
Query: 1 ttaggactaatctagtagaatcctgggccctactggaccacaccatgagttttgaggaac 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 ttaggactaatctagtagaatcctgggtcctactggaccacaccatgagttttgaggaac 260
Query: 61 tagaaaagccttcccatcctgtcctctacactgaaccctgcttgaggctgggggatgatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagaaaagccttcccatcctgtcctctacactgaaccctgcttgaggctgggggatgatt 320
Query: 121 gcagtgacaccctccccccacttgaggactctcagtttacgaccctcagattatggtgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagtgacaccctccccccacttgaggactctcagtttacgaccctcagattatggtgag 380
Query: 181 ccaggtccatcgtgaaaaacctcacactagtcacaggctccagacttgagtctgtctgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaggtccatcgtgaaaaacctcacactagtcacaggctccagacttgagtctgtctgtc 440
Query: 241 tccttactgggaagcagtccaggattagggaatgcacatgacatgggttgcccactagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccttactgggaagcagtccaggattagggaatgcacatgacatgggttgcccactagca 500
Query: 301 caccgtgttcttggacatccagcttgtcctgaaaggccagagcccttttgacagccgggg 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacggtgttcttggacatccagcttgtcctgaaaggccagagcccttttgacagccgggg 560
Query: 361 tggatcagagccaccagtgtggtggtgctctcagtagtcaaatggataggatagaggtac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggatcagagccaccagtgtggtggtgctctcagtagtcaaatggataggatagaggtac 620
Query: 421 acagaacccagaggcagcaggaggacttgaggtcactaggaagggtcatggggatcctta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acagaacccagaggcagcaggaggacttgaggtcactaggaagggtcatggggatcctta 680
Query: 481 agtataggggagagtttagggatactttgagggacctttagagctgagctgagagactgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtataggggagagtttagggatactttgagggacctttagagctgagctgagagactgc 740
Query: 541 tggagttgcctagcctcagggggaggtagctgggtgagaatctgagcatcatcaacaggt 600
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 741 tggagttgcctagcctcagggggaggtagctgggtgagaatccgagcatcatcaacaggt 800
Query: 601 ccaaggccggagggacagtcaggag 625
|||||| ||||||||||||||||||
Sbjct: 801 ccaagggcggagggacagtcaggag 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
